Annotation Detail for SDR42E1
Basic Information Top
| Gene Symbol: | SDR42E1 ( - ) |
|---|---|
| Gene Full Name: | short chain dehydrogenase/reductase family 42E, member 1 |
| Band: | 16q23.3 |
| Quick Links | Entrez ID:93517; OMIM: NA; Uniprot ID:D42E1_HUMAN; ENSEMBL ID: ENSG00000184860; HGNC ID: 29834 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.87779
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 12 / 1939121 | 6 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 22 / 3360307 | 6 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 1 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 2 / 89626 | 22 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P129458
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.18 ± 1.18 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.68 ± 0.22 | |
| Basal Part of Pons | 1.29 ± 0.65 | |
| Cerebellar Cortex | 1.43 ± 0.67 | |
| Cerebellar Nuclei | 2 ± 0.75 | |
| Claustrum | 2.53 ± 0.84 | |
| Epithalamus | 1.41 ± 0.76 | |
| Frontal Lobe | 1.51 ± 0.65 | |
| Globus Pallidus | 2.3 ± 0.66 | |
| Hypothalamus | 2.31 ± 0.96 | |
| Insula | 1.45 ± 0.52 | |
| Limbic Lobe | 1.71 ± 0.77 | |
| Mesencephalon | 1.99 ± 1.05 | |
| Myelencephalon | 1.81 ± 0.79 | |
| Occipital Lobe | 1.75 ± 0.73 | |
| Parietal Lobe | 1.7 ± 0.83 | |
| Pontine Tegmentum | 1.9 ± 0.66 | |
| Striatum | 2.73 ± 0.98 | |
| Subthalamus | 1.81 ± 0.66 | |
| Temporal Lobe | 1.73 ± 0.85 | |
| Thalamus | 1.75 ± 0.69 | |
| White Matter | 2.22 ± 0.27 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4632417N05Rik | CB | Cerebellum | 3.46 |  |
| 4.8 | | |||
| 4632417N05Rik | CTX | Cerebral cortex | 2.54 | |
| 2.58 | | |||
| 4632417N05Rik | HIP | Hippocampal region | 1.38 | |
| 1.46 | | |||
| 4632417N05Rik | HPF | Hippocampal formation | 1.47 | |
| 1.47 | | |||
| 4632417N05Rik | HY | Hypothalamus | 0.13 | |
| 0.32 | | |||
| 4632417N05Rik | LSX | Lateral septal complex | 0.21 | |
| 0.2 | | |||
| 4632417N05Rik | MB | Midbrain | 0.34 | |
| 0.78 | | |||
| 4632417N05Rik | MY | Medulla | 1.03 | |
| 1.23 | | |||
| 4632417N05Rik | OLF | Olfactory bulb | 7.21 | |
| 7.1 | | |||
| 4632417N05Rik | P | Pons | 0.94 | |
| 1.19 | | |||
| 4632417N05Rik | PAL | Pallidum | 0.19 | |
| 0.27 | | |||
| 4632417N05Rik | RHP | Retrohippocampal region | 1.73 | |
| 1.56 | | |||
| 4632417N05Rik | sAMY | Striatum-like amygdalar nuclei | 0.34 | |
| 0.34 | | |||
| 4632417N05Rik | STR | Striatum | 0.12 | |
| 0.11 | | |||
| 4632417N05Rik | STRd | Striatum dorsal region | 0.09 | |
| 0.08 | | |||
| 4632417N05Rik | STRv | Striatum ventral region | 0.08 | |
| 0.06 | | |||
| 4632417N05Rik | TH | Thalamus | 0.32 | |
| 0.28 | |