AutismKB 2.0

Annotation Detail for MUC16


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Basic Information Top
Gene Symbol:MUC16 ( CA125,FLJ14303 )
Gene Full Name: mucin 16, cell surface associated
Band: 19p13.2
Quick LinksEntrez ID:94025; OMIM: 606154; Uniprot ID:MUC16_HUMAN; ENSEMBL ID: ENSG00000181143; HGNC ID: 15582
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult88 / 193912145
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor6 / 34366174
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor11 / 103127106
lymphoma0 / 717550 
non-neoplasia8 / 9725082
normal45 / 336030713
ovarian tumor6 / 7668278
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor25 / 90257276
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix6 / 48171124
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye9 / 21105442
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx1 / 2414541
liver0 / 2077430 
lung15 / 33697444
lymph0 / 442700 
lymph node1 / 9161010
mammary gland26 / 153271169
mouth0 / 670520 
muscle4 / 10771537
nerve0 / 157680 
ovary6 / 10205158
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta6 / 28082521
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach2 / 9661920
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea10 / 52413190
umbilical cord0 / 136800 
uterus29 / 232878124
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220196_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.2
Adipocyte4.1
AdrenalCortex4.45
Adrenalgland3.5
Amygdala4.3
Appendix4.25
AtrioventricularNode3.3
BDCA4+_DentriticCells4.6
Bonemarrow4.15
BronchialEpithelialCells4.1
CD105+_Endothelial4.2
CD14+_Monocytes4.5
CD19+_BCells(neg._sel.)4.45
CD33+_Myeloid5.35
CD34+5.25
CD4+_Tcells4.5
CD56+_NKCells5
CD71+_EarlyErythroid3.9
CD8+_Tcells4.05
CardiacMyocytes5.4
Caudatenucleus3.7
Cerebellum3.35
CerebellumPeduncles4.7
CiliaryGanglion2.95
CingulateCortex4.25
Colorectaladenocarcinoma4.15
DorsalRootGanglion3.2
FetalThyroid4
Fetalbrain4.15
Fetalliver3.6
Fetallung3.45
GlobusPallidus3.05
Heart5.45
Hypothalamus4.5
Kidney3.3
Leukemia_chronicMyelogenousK-5623.75
Leukemia_promyelocytic-HL-603.65
Leukemialymphoblastic(MOLT-4)3.35
Liver5.4
Lung4.6
Lymphnode3.6
Lymphoma_burkitts(Daudi)5.3
Lymphoma_burkitts(Raji)5.75
MedullaOblongata3.8
OccipitalLobe3.7
OlfactoryBulb3.3
Ovary2.75
Pancreas3.3
PancreaticIslet4.45
ParietalLobe4.4
Pituitary4.85
Placenta4.4
Pons3.9
PrefrontalCortex5.15
Prostate4.9
Salivarygland3.3
SkeletalMuscle4.9
Skin3.2
SmoothMuscle4.7
Spinalcord4.4
SubthalamicNucleus3.8
SuperiorCervicalGanglion4.85
TemporalLobe3.75
Testis3.6
TestisGermCell3.5
TestisIntersitial3.5
TestisLeydigCell4.1
TestisSeminiferousTubule3.55
Thalamus4.25
Thymus3.3
Thyroid5.15
Tongue4.05
Tonsil4.05
Trachea27.1
TrigeminalGanglion4.25
Uterus3.45
UterusCorpus3.7
WholeBlood4.55
Wholebrain3.45
colon4.15
pineal_day5.2
pineal_night5.08
retina5.025
small_intestine4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P5211
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.07 ± 0.99
Basal Forebrain1.62 ± 0.21
Basal Part of Pons1.5 ± 0.39
Cerebellar Cortex1.58 ± 0.7
Cerebellar Nuclei1.98 ± 0.72
Claustrum2.53 ± 0.9
Epithalamus1.34 ± 0.69
Frontal Lobe1.51 ± 0.55
Globus Pallidus2.14 ± 0.29
Hypothalamus1.67 ± 0.63
Insula1.49 ± 0.48
Limbic Lobe1.69 ± 0.63
Mesencephalon1.82 ± 0.66
Myelencephalon1.72 ± 0.67
Occipital Lobe1.86 ± 0.85
Parietal Lobe1.64 ± 0.58
Pontine Tegmentum1.66 ± 0.63
Striatum1.83 ± 0.64
Subthalamus1.82 ± 0.64
Temporal Lobe1.56 ± 0.62
Thalamus1.65 ± 0.59
White Matter2.13 ± 0.23
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
1110008I14RikCBCerebellum1.66
1.99
1110008I14RikCTXCerebral cortex0.85
0.62
1110008I14RikHIPHippocampal region0.54
0.5
1110008I14RikHPFHippocampal formation0.63
0.54
1110008I14RikHYHypothalamus0.46
0.44
1110008I14RikLSXLateral septal complex0.04
0
1110008I14RikMBMidbrain1.06
1.15
1110008I14RikMYMedulla3.67
3.98
1110008I14RikOLFOlfactory bulb2.64
1.73
1110008I14RikPPons1.64
1.9
1110008I14RikPALPallidum0.26
0.23
1110008I14RikRHPRetrohippocampal region0.79
0.61
1110008I14RiksAMYStriatum-like amygdalar nuclei0.17
0.17
1110008I14RikSTRStriatum0.23
0.15
1110008I14RikSTRdStriatum dorsal region0.29
0.19
1110008I14RikSTRvStriatum ventral region0.11
0.08
1110008I14RikTHThalamus0.84
0.67
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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