AutismKB 2.0

Annotation Detail for PEX16


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Basic Information Top
Gene Symbol:PEX16 ( - )
Gene Full Name: peroxisomal biogenesis factor 16
Band: 11p11.2
Quick LinksEntrez ID:9409; OMIM: 603360; Uniprot ID:PEX16_HUMAN; ENSEMBL ID: ENSG00000121680; HGNC ID: 8857
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus6 / 56401210
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult62 / 193912131
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor8 / 9417884
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor8 / 11424670
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor6 / 26384522
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia1 / 9584210
liver tumor6 / 9635962
lung tumor11 / 103127106
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal55 / 336030716
ovarian tumor0 / 766820 
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer2 / 10268019
retinoblastoma2 / 4635643
skin tumor5 / 12494940
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder0 / 297570 
blood1 / 1234788
bone7 / 7165597
bone marrow1 / 4880120
brain23 / 110098920
cervix3 / 4817162
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye9 / 21105442
heart0 / 896260 
intestine11 / 23447246
kidney3 / 21177714
larynx0 / 241450 
liver8 / 20774338
lung13 / 33697438
lymph0 / 442700 
lymph node0 / 916100 
mammary gland9 / 15327158
mouth0 / 670520 
muscle0 / 1077150 
nerve1 / 1576863
ovary2 / 10205119
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta5 / 28082517
prostate4 / 18934521
salivary gland0 / 201550 
skin6 / 21057428
spleen0 / 539520 
stomach3 / 9661931
testis2 / 3304426
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
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  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221603_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.5
Adipocyte3.5
AdrenalCortex3.8
Adrenalgland3.6
Amygdala3.8
Appendix3.6
AtrioventricularNode2.7
BDCA4+_DentriticCells4
Bonemarrow3.55
BronchialEpithelialCells3.55
CD105+_Endothelial3.6
CD14+_Monocytes3.85
CD19+_BCells(neg._sel.)4.05
CD33+_Myeloid4.65
CD34+6.1
CD4+_Tcells4
CD56+_NKCells4.25
CD71+_EarlyErythroid3.35
CD8+_Tcells3.55
CardiacMyocytes4.65
Caudatenucleus3.2
Cerebellum2.9
CerebellumPeduncles4
CiliaryGanglion2.55
CingulateCortex3.65
Colorectaladenocarcinoma3.6
DorsalRootGanglion2.75
FetalThyroid3.45
Fetalbrain3.6
Fetalliver3.1
Fetallung3
GlobusPallidus2.6
Heart4.55
Hypothalamus3.9
Kidney2.9
Leukemia_chronicMyelogenousK-5623.25
Leukemia_promyelocytic-HL-603.15
Leukemialymphoblastic(MOLT-4)2.9
Liver4.75
Lung3.95
Lymphnode3.15
Lymphoma_burkitts(Daudi)4.5
Lymphoma_burkitts(Raji)5
MedullaOblongata3.25
OccipitalLobe3.2
OlfactoryBulb2.85
Ovary2.4
Pancreas2.9
PancreaticIslet3.8
ParietalLobe3.7
Pituitary4.15
Placenta3.7
Pons3.35
PrefrontalCortex4.5
Prostate4.2
Salivarygland2.85
SkeletalMuscle4.1
Skin2.75
SmoothMuscle4.05
Spinalcord3.8
SubthalamicNucleus3.25
SuperiorCervicalGanglion4.05
TemporalLobe3.2
Testis3.1
TestisGermCell3.05
TestisIntersitial3
TestisLeydigCell3.55
TestisSeminiferousTubule3.05
Thalamus3.6
Thymus2.85
Thyroid4.55
Tongue3.5
Tonsil3.5
Trachea3
TrigeminalGanglion3.55
Uterus2.95
UterusCorpus3.15
WholeBlood3.95
Wholebrain3.05
colon3.6
pineal_day4.5
pineal_night4.38
retina4.35
small_intestine3.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6490_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.19 ± 0.5
Basal Forebrain3.52 ± 0.3
Basal Part of Pons3.81 ± 0.33
Cerebellar Cortex3.67 ± 0.47
Cerebellar Nuclei3.8 ± 0.35
Claustrum3.69 ± 0.87
Epithalamus3.64 ± 0.51
Frontal Lobe3.96 ± 0.5
Globus Pallidus4.13 ± 0.49
Hypothalamus3.76 ± 0.58
Insula3.97 ± 0.34
Limbic Lobe3.95 ± 0.47
Mesencephalon3.98 ± 0.61
Myelencephalon3.93 ± 0.54
Occipital Lobe3.54 ± 0.62
Parietal Lobe3.88 ± 0.48
Pontine Tegmentum3.85 ± 0.59
Striatum3.77 ± 0.64
Subthalamus3.34 ± 0.75
Temporal Lobe4.07 ± 0.42
Thalamus3.78 ± 0.51
White Matter4.49 ± 0.63
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pex16CBCerebellum100
100
Pex16CTXCerebral cortex100
100
Pex16HIPHippocampal region100
100
Pex16HPFHippocampal formation100
100
Pex16HYHypothalamus100
100
Pex16LSXLateral septal complex100
100
Pex16MBMidbrain100
100
Pex16MYMedulla100
100
Pex16OLFOlfactory bulb100
100
Pex16PPons100
100
Pex16PALPallidum100
100
Pex16RHPRetrohippocampal region100
100
Pex16sAMYStriatum-like amygdalar nuclei100
100
Pex16STRStriatum100
100
Pex16STRdStriatum dorsal region100
100
Pex16STRvStriatum ventral region100
100
Pex16THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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