Annotation Detail for SYTL4
Basic Information Top
| Gene Symbol: | SYTL4 ( DKFZp451P0116,FLJ40960,SLP4 ) |
|---|---|
| Gene Full Name: | synaptotagmin-like 4 |
| Band: | Xq22.1 |
| Quick Links | Entrez ID:94121; OMIM: 300723; Uniprot ID:SYTL4_HUMAN; ENSEMBL ID: ENSG00000102362; HGNC ID: 15588 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.592224
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 22 / 564012 | 39 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 29 / 1939121 | 14 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 2 / 17290 | 115 |  |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 57 / 3360307 | 16 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 12 / 125191 | 95 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 9 / 123478 | 72 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 11 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 4 / 211054 | 18 | |
| heart | 1 / 89626 | 11 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 1 / 24145 | 41 | |
| liver | 3 / 207743 | 14 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 4 / 330442 | 12 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 30 / 232878 | 128 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_13157_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.2 ± 0.71 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.7 ± 0.7 | |
| Basal Part of Pons | 3.09 ± 0.61 | |
| Cerebellar Cortex | 3.24 ± 0.54 | |
| Cerebellar Nuclei | 3.68 ± 0.66 | |
| Claustrum | 3.73 ± 0.57 | |
| Epithalamus | 4.51 ± 0.5 | |
| Frontal Lobe | 3.79 ± 0.82 | |
| Globus Pallidus | 6.42 ± 0.7 | |
| Hypothalamus | 4.19 ± 0.72 | |
| Insula | 3.53 ± 0.79 | |
| Limbic Lobe | 3.83 ± 0.87 | |
| Mesencephalon | 4.33 ± 0.75 | |
| Myelencephalon | 4.03 ± 0.79 | |
| Occipital Lobe | 3.91 ± 0.92 | |
| Parietal Lobe | 3.68 ± 0.83 | |
| Pontine Tegmentum | 3.98 ± 0.76 | |
| Striatum | 4.67 ± 0.56 | |
| Subthalamus | 3.59 ± 0.6 | |
| Temporal Lobe | 3.74 ± 0.69 | |
| Thalamus | 4.01 ± 0.67 | |
| White Matter | 4.95 ± 0.31 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sytl4 | CB | Cerebellum | 1.09 | |
| 2.48 | | |||
| Sytl4 | CTX | Cerebral cortex | 0.58 | |
| 0.78 | | |||
| Sytl4 | HIP | Hippocampal region | 0.42 | |
| 0.67 | | |||
| Sytl4 | HPF | Hippocampal formation | 0.41 | |
| 0.64 | | |||
| Sytl4 | HY | Hypothalamus | 0.95 | |
| 1.04 | | |||
| Sytl4 | LSX | Lateral septal complex | 0.44 | |
| 0.37 | | |||
| Sytl4 | MB | Midbrain | 0.62 | |
| 0.78 | | |||
| Sytl4 | MY | Medulla | 0.63 | |
| 0.79 | | |||
| Sytl4 | OLF | Olfactory bulb | 1.67 | |
| 1.76 | | |||
| Sytl4 | P | Pons | 4.67 | |
| 7.99 | | |||
| Sytl4 | PAL | Pallidum | 1.73 | |
| 1.63 | | |||
| Sytl4 | RHP | Retrohippocampal region | 0.39 | |
| 0.54 | | |||
| Sytl4 | sAMY | Striatum-like amygdalar nuclei | 0.86 | |
| 0.64 | | |||
| Sytl4 | STR | Striatum | 2.38 | |
| 3.02 | | |||
| Sytl4 | STRd | Striatum dorsal region | 3.63 | |
| 4.84 | | |||
| Sytl4 | STRv | Striatum ventral region | 0.31 | |
| 0.26 | | |||
| Sytl4 | TH | Thalamus | 0.51 | |
| 0.96 | |