AutismKB 2.0

Annotation Detail for CHST2


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:CHST2 ( C6ST,GST-2,GST2,Gn6ST-1 )
Gene Full Name: carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2
Band: 3q24
Quick LinksEntrez ID:9435; OMIM: 603798; Uniprot ID:CHST2_HUMAN; ENSEMBL ID: ENSG00000175040; HGNC ID: 1970
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst3 / 6231948
fetus13 / 56401223
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult44 / 193912122
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor5 / 26384518
glioma9 / 10688384
head and neck tumor0 / 1363020 
kidney tumor4 / 6895958
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor4 / 10312738
lymphoma2 / 7175527
non-neoplasia3 / 9725030
normal71 / 336030721
ovarian tumor0 / 766820 
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain29 / 110098926
cervix0 / 481710 
connective tissue2 / 14925513
ear4 / 16212246
embryonic tissue5 / 21572223
esophagus1 / 2020949
eye12 / 21105456
heart0 / 896260 
intestine0 / 2344720 
kidney5 / 21177723
larynx0 / 241450 
liver0 / 2077430 
lung9 / 33697426
lymph0 / 442700 
lymph node2 / 9161021
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas9 / 21481241
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland2 / 16585120
placenta11 / 28082539
prostate3 / 18934515
salivary gland0 / 201550 
skin4 / 21057418
spleen2 / 5395237
stomach0 / 966190 
testis6 / 33044218
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203921_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.95
Adipocyte62.6
AdrenalCortex20.2
Adrenalgland27.85
Amygdala289.45
Appendix30.95
AtrioventricularNode21.65
BDCA4+_DentriticCells40.7
Bonemarrow154.15
BronchialEpithelialCells19
CD105+_Endothelial192.25
CD14+_Monocytes37.75
CD19+_BCells(neg._sel.)57.95
CD33+_Myeloid40.35
CD34+46.7
CD4+_Tcells20.15
CD56+_NKCells1058.75
CD71+_EarlyErythroid1431.7
CD8+_Tcells25.85
CardiacMyocytes29.7
Caudatenucleus53.75
Cerebellum139.7
CerebellumPeduncles62
CiliaryGanglion20.85
CingulateCortex107.95
Colorectaladenocarcinoma31.4
DorsalRootGanglion26.25
FetalThyroid44.8
Fetalbrain78.7
Fetalliver214.1
Fetallung76.45
GlobusPallidus20.25
Heart63.4
Hypothalamus80.6
Kidney28.65
Leukemia_chronicMyelogenousK-56233.8
Leukemia_promyelocytic-HL-6033.95
Leukemialymphoblastic(MOLT-4)24.3
Liver37.7
Lung41.75
Lymphnode31.9
Lymphoma_burkitts(Daudi)23.9
Lymphoma_burkitts(Raji)110.9
MedullaOblongata102.1
OccipitalLobe55.45
OlfactoryBulb118.25
Ovary26.25
Pancreas14.55
PancreaticIslet26.2
ParietalLobe52.85
Pituitary36.1
Placenta128.8
Pons53.65
PrefrontalCortex70.35
Prostate71.85
Salivarygland31.45
SkeletalMuscle42.15
Skin15
SmoothMuscle18.9
Spinalcord260.1
SubthalamicNucleus31.75
SuperiorCervicalGanglion31.2
TemporalLobe36.35
Testis24.2
TestisGermCell10.55
TestisIntersitial19.6
TestisLeydigCell18.65
TestisSeminiferousTubule21.15
Thalamus167.45
Thymus202.25
Thyroid77.85
Tongue17.7
Tonsil38.85
Trachea20.15
TrigeminalGanglion18.4
Uterus30.55
UterusCorpus21.9
WholeBlood143.8
Wholebrain253.75
colon22.95
pineal_day18.6
pineal_night18.9
retina98.025
small_intestine71.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15964_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.24 ± 0.58
Basal Forebrain4.4 ± 0.36
Basal Part of Pons4.53 ± 0.41
Cerebellar Cortex4.21 ± 0.54
Cerebellar Nuclei4.38 ± 0.42
Claustrum4.72 ± 0.87
Epithalamus3.5 ± 0.46
Frontal Lobe4.16 ± 0.68
Globus Pallidus4.74 ± 0.86
Hypothalamus3.78 ± 0.65
Insula3.98 ± 0.59
Limbic Lobe4.52 ± 0.72
Mesencephalon3.98 ± 0.73
Myelencephalon4.37 ± 0.71
Occipital Lobe4.65 ± 0.73
Parietal Lobe4.21 ± 0.66
Pontine Tegmentum4.26 ± 0.88
Striatum4.82 ± 0.71
Subthalamus4.82 ± 1.52
Temporal Lobe4.23 ± 0.7
Thalamus4.38 ± 0.66
White Matter4.08 ± 1.2
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Chst2CBCerebellum23.35
48.27
Chst2CTXCerebral cortex24.92
17.34
Chst2HIPHippocampal region70.64
79.85
Chst2HPFHippocampal formation60.22
59.24
Chst2HYHypothalamus23.27
17.77
Chst2LSXLateral septal complex79.16
60.12
Chst2MBMidbrain26.53
23.73
Chst2MYMedulla35.02
38.5
Chst2OLFOlfactory bulb44.6
24.43
Chst2PPons34.03
33.13
Chst2PALPallidum38.87
34.23
Chst2RHPRetrohippocampal region37.31
25.33
Chst2sAMYStriatum-like amygdalar nuclei35.79
27.09
Chst2STRStriatum34.94
26
Chst2STRdStriatum dorsal region18.26
12.54
Chst2STRvStriatum ventral region79.33
58.92
Chst2THThalamus64.43
63.09
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved