AutismKB 2.0

Annotation Detail for CHST10


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Basic Information Top
Gene Symbol:CHST10 ( HNK-1ST,HNK1ST,MGC17148 )
Gene Full Name: carbohydrate sulfotransferase 10
Band: 2q11.2
Quick LinksEntrez ID:9486; OMIM: 606376; Uniprot ID:CHSTA_HUMAN; ENSEMBL ID: ENSG00000115526; HGNC ID: 19650
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst5 / 6231980
fetus49 / 56401286
neonate0 / 310970 
infant2 / 2362084
juvenile3 / 5555653
adult50 / 193912125
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor1 / 3436629
chondrosarcoma4 / 8282348
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor19 / 26384572
glioma8 / 10688374
head and neck tumor4 / 13630229
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor1 / 9635910
lung tumor3 / 10312729
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal131 / 336030738
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor5 / 12494940
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone3 / 7165541
bone marrow1 / 4880120
brain71 / 110098964
cervix1 / 4817120
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue10 / 21572246
esophagus0 / 202090 
eye2 / 2110549
heart2 / 8962622
intestine0 / 2344720 
kidney3 / 21177714
larynx0 / 241450 
liver1 / 2077434
lung9 / 33697426
lymph0 / 442700 
lymph node1 / 9161010
mammary gland3 / 15327119
mouth2 / 6705229
muscle0 / 1077150 
nerve1 / 1576863
ovary4 / 10205139
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta10 / 28082535
prostate5 / 18934526
salivary gland0 / 201550 
skin5 / 21057423
spleen0 / 539520 
stomach1 / 9661910
testis17 / 33044251
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204065_at
Cell line Expression level Expression bar
721_B_lymphoblasts3.95
Adipocyte6.65
AdrenalCortex7.2
Adrenalgland5.65
Amygdala14.95
Appendix7.15
AtrioventricularNode5.05
BDCA4+_DentriticCells5.3
Bonemarrow6.55
BronchialEpithelialCells6.4
CD105+_Endothelial6.45
CD14+_Monocytes4.8
CD19+_BCells(neg._sel.)6.75
CD33+_Myeloid6.1
CD34+8.35
CD4+_Tcells6.7
CD56+_NKCells6.8
CD71+_EarlyErythroid6.05
CD8+_Tcells5.45
CardiacMyocytes8.7
Caudatenucleus7.05
Cerebellum7.05
CerebellumPeduncles8.4
CiliaryGanglion4.5
CingulateCortex9.95
Colorectaladenocarcinoma6.5
DorsalRootGanglion5.05
FetalThyroid8.2
Fetalbrain23.35
Fetalliver5.85
Fetallung5.7
GlobusPallidus5.55
Heart8.7
Hypothalamus12.7
Kidney5.5
Leukemia_chronicMyelogenousK-5628.9
Leukemia_promyelocytic-HL-605.85
Leukemialymphoblastic(MOLT-4)5.45
Liver16.05
Lung9.2
Lymphnode5.75
Lymphoma_burkitts(Daudi)9.15
Lymphoma_burkitts(Raji)9.35
MedullaOblongata11.75
OccipitalLobe7.7
OlfactoryBulb5.2
Ovary4.75
Pancreas5.4
PancreaticIslet7.05
ParietalLobe12.15
Pituitary7.85
Placenta6.9
Pons6.5
PrefrontalCortex39.9
Prostate7.9
Salivarygland5.3
SkeletalMuscle8.15
Skin5.25
SmoothMuscle7.7
Spinalcord7.3
SubthalamicNucleus6.05
SuperiorCervicalGanglion7.65
TemporalLobe9.15
Testis7
TestisGermCell5.95
TestisIntersitial8.55
TestisLeydigCell8.4
TestisSeminiferousTubule7.05
Thalamus8.85
Thymus5.3
Thyroid9.95
Tongue6.6
Tonsil6.25
Trachea5.55
TrigeminalGanglion6.5
Uterus5.55
UterusCorpus6.2
WholeBlood7.3
Wholebrain33.05
colon6.6
pineal_day8.42
pineal_night7.48
retina9.05
small_intestine5.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1128_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.1 ± 0.56
Basal Forebrain4.79 ± 0.32
Basal Part of Pons4.66 ± 0.71
Cerebellar Cortex4.51 ± 0.45
Cerebellar Nuclei4.76 ± 0.27
Claustrum5.51 ± 0.48
Epithalamus4.53 ± 0.43
Frontal Lobe4.77 ± 0.52
Globus Pallidus4.79 ± 0.23
Hypothalamus4.29 ± 0.59
Insula4.64 ± 0.47
Limbic Lobe4.76 ± 0.55
Mesencephalon4.77 ± 0.56
Myelencephalon4.86 ± 0.52
Occipital Lobe5.16 ± 0.42
Parietal Lobe5 ± 0.53
Pontine Tegmentum4.79 ± 0.54
Striatum4.86 ± 0.53
Subthalamus4.3 ± 0.42
Temporal Lobe4.84 ± 0.5
Thalamus5.09 ± 0.53
White Matter4.38 ± 1.11
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Chst10CBCerebellum16.53
24.2
Chst10CTXCerebral cortex15.94
12.69
Chst10HIPHippocampal region16.02
20.59
Chst10HPFHippocampal formation16.75
18.07
Chst10HYHypothalamus4.87
3.83
Chst10LSXLateral septal complex56.19
48.98
Chst10MBMidbrain7.52
8.39
Chst10MYMedulla7.66
10.07
Chst10OLFOlfactory bulb17.22
13.88
Chst10PPons7.17
8.62
Chst10PALPallidum10.74
10.81
Chst10RHPRetrohippocampal region18
15.49
Chst10sAMYStriatum-like amygdalar nuclei8.44
7
Chst10STRStriatum12.46
11.12
Chst10STRdStriatum dorsal region8.21
8
Chst10STRvStriatum ventral region14.22
11.3
Chst10THThalamus18.54
17.81
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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