AutismKB 2.0

Annotation Detail for MAGED1


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Basic Information Top
Gene Symbol:MAGED1 ( DLXIN-1,NRAGE )
Gene Full Name: melanoma antigen family D, 1
Band: Xp11.22
Quick LinksEntrez ID:9500; OMIM: 300224; Uniprot ID:MAGD1_HUMAN; ENSEMBL ID: ENSG00000179222; HGNC ID: 6813
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body34 / 70761480
blastocyst27 / 62319433
fetus90 / 564012159
neonate3 / 3109796
infant2 / 2362084
juvenile20 / 55556359
adult301 / 1939121155
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor5 / 12794390
bladder carcinoma2 / 17475114
breast (mammary gland) tumor15 / 94178159
cervical tumor0 / 343660 
chondrosarcoma44 / 82823531
colorectal tumor19 / 114246166
esophageal tumor0 / 172900 
gastrointestinal tumor21 / 119369175
germ cell tumor71 / 263845269
glioma30 / 106883280
head and neck tumor23 / 136302168
kidney tumor22 / 68959319
leukemia17 / 95842177
liver tumor37 / 96359383
lung tumor39 / 103127378
lymphoma16 / 71755222
non-neoplasia13 / 97250133
normal454 / 3360307135
ovarian tumor15 / 76682195
pancreatic tumor51 / 104616487
primitive neuroectodermal tumor of the CNS76 / 125680604
prostate cancer23 / 102680223
retinoblastoma0 / 463560 
skin tumor137 / 1249491096
soft tissue/muscle tissue tumor40 / 125191319
uterine tumor30 / 90257332
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland6 / 33197180
ascites5 / 40015124
bladder1 / 2975733
blood20 / 123478161
bone20 / 71655279
bone marrow4 / 4880181
brain201 / 1100989182
cervix1 / 4817120
connective tissue17 / 149255113
ear7 / 16212431
embryonic tissue90 / 215722417
esophagus0 / 202090 
eye39 / 211054184
heart22 / 89626245
intestine30 / 234472127
kidney26 / 211777122
larynx2 / 2414582
liver45 / 207743216
lung102 / 336974302
lymph10 / 44270225
lymph node10 / 91610109
mammary gland21 / 153271137
mouth1 / 6705214
muscle18 / 107715167
nerve7 / 15768443
ovary35 / 102051342
pancreas59 / 214812274
parathyroid2 / 2053997
pharynx2 / 4132848
pituitary gland7 / 16585422
placenta83 / 280825295
prostate27 / 189345142
salivary gland11 / 20155545
skin150 / 210574712
spleen3 / 5395255
stomach12 / 96619124
testis31 / 33044293
thymus0 / 811310 
thyroid9 / 47473189
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord2 / 13680146
uterus48 / 232878206
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209014_at
Cell line Expression level Expression bar
721_B_lymphoblasts363.2
Adipocyte188.15
AdrenalCortex171.9
Adrenalgland383.4
Amygdala573.75
Appendix73.3
AtrioventricularNode43.5
BDCA4+_DentriticCells555.3
Bonemarrow46.85
BronchialEpithelialCells271
CD105+_Endothelial185.25
CD14+_Monocytes29.1
CD19+_BCells(neg._sel.)143.65
CD33+_Myeloid68.6
CD34+525.05
CD4+_Tcells110.5
CD56+_NKCells160.7
CD71+_EarlyErythroid43.35
CD8+_Tcells133
CardiacMyocytes542.8
Caudatenucleus227.25
Cerebellum302.25
CerebellumPeduncles292.25
CiliaryGanglion47.05
CingulateCortex285.45
Colorectaladenocarcinoma181.7
DorsalRootGanglion68.25
FetalThyroid357.95
Fetalbrain673.55
Fetalliver245.65
Fetallung195.15
GlobusPallidus157.75
Heart255.45
Hypothalamus789.35
Kidney84.75
Leukemia_chronicMyelogenousK-56211
Leukemia_promyelocytic-HL-6094.05
Leukemialymphoblastic(MOLT-4)189.2
Liver211.75
Lung282.05
Lymphnode61.75
Lymphoma_burkitts(Daudi)29.7
Lymphoma_burkitts(Raji)54.9
MedullaOblongata221
OccipitalLobe354
OlfactoryBulb94.55
Ovary37.1
Pancreas110.4
PancreaticIslet279
ParietalLobe287.9
Pituitary991.3
Placenta397.35
Pons139.85
PrefrontalCortex449.95
Prostate598.05
Salivarygland127.75
SkeletalMuscle5.8
Skin49
SmoothMuscle1032.15
Spinalcord357.95
SubthalamicNucleus233.3
SuperiorCervicalGanglion57.55
TemporalLobe229.95
Testis400.9
TestisGermCell484.65
TestisIntersitial139.1
TestisLeydigCell158.3
TestisSeminiferousTubule143.3
Thalamus402.45
Thymus221.65
Thyroid545.95
Tongue22.25
Tonsil79.05
Trachea238.35
TrigeminalGanglion49.5
Uterus174.9
UterusCorpus67.35
WholeBlood13.55
Wholebrain597.85
colon168.55
pineal_day403.76
pineal_night432.98
retina456.2
small_intestine140.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P391526
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.75 ± 0.72
Basal Forebrain8.11 ± 0.46
Basal Part of Pons8.62 ± 0.55
Cerebellar Cortex8.29 ± 0.47
Cerebellar Nuclei7.83 ± 0.39
Claustrum7.72 ± 0.82
Epithalamus8.3 ± 0.56
Frontal Lobe8.4 ± 0.49
Globus Pallidus7.51 ± 0.39
Hypothalamus9.12 ± 0.39
Insula8.55 ± 0.38
Limbic Lobe7.95 ± 0.84
Mesencephalon7.89 ± 0.61
Myelencephalon8.01 ± 0.81
Occipital Lobe7.22 ± 0.85
Parietal Lobe8.04 ± 0.57
Pontine Tegmentum8.04 ± 0.73
Striatum7.09 ± 0.76
Subthalamus8.38 ± 0.27
Temporal Lobe8.4 ± 0.57
Thalamus7.98 ± 0.46
White Matter6.61 ± 0.32
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Maged1CBCerebellum100
100
Maged1CTXCerebral cortex100
100
Maged1HIPHippocampal region100
100
Maged1HPFHippocampal formation100
100
Maged1HYHypothalamus100
100
Maged1LSXLateral septal complex100
100
Maged1MBMidbrain100
100
Maged1MYMedulla100
100
Maged1OLFOlfactory bulb100
100
Maged1PPons100
100
Maged1PALPallidum100
100
Maged1RHPRetrohippocampal region100
100
Maged1sAMYStriatum-like amygdalar nuclei100
100
Maged1STRStriatum100
100
Maged1STRdStriatum dorsal region100
100
Maged1STRvStriatum ventral region100
100
Maged1THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00503868 12 504 515 EYTDVYPEIIER Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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