AutismKB 2.0

Annotation Detail for GAL3ST1


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Basic Information Top
Gene Symbol:GAL3ST1 ( CST )
Gene Full Name: galactose-3-O-sulfotransferase 1
Band: 22q12.2
Quick LinksEntrez ID:9514; OMIM: 602300; Uniprot ID:G3ST1_HUMAN; ENSEMBL ID: ENSG00000128242; HGNC ID: 24240
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus14 / 56401224
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult23 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor15 / 68959217
leukemia0 / 958420 
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal62 / 336030718
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain45 / 110098940
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney30 / 211777141
larynx0 / 241450 
liver3 / 20774314
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach2 / 9661920
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205670_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.25
Adipocyte4.85
AdrenalCortex5.2
Adrenalgland4.2
Amygdala6.55
Appendix5.2
AtrioventricularNode3.8
BDCA4+_DentriticCells5.5
Bonemarrow4.95
BronchialEpithelialCells4.7
CD105+_Endothelial5
CD14+_Monocytes5.35
CD19+_BCells(neg._sel.)5.25
CD33+_Myeloid6
CD34+5.9
CD4+_Tcells5.45
CD56+_NKCells5.8
CD71+_EarlyErythroid4.65
CD8+_Tcells4.65
CardiacMyocytes6.45
Caudatenucleus4.65
Cerebellum4
CerebellumPeduncles5.75
CiliaryGanglion3.5
CingulateCortex5.1
Colorectaladenocarcinoma5
DorsalRootGanglion3.8
FetalThyroid4.8
Fetalbrain4.8
Fetalliver6.25
Fetallung4.15
GlobusPallidus3.7
Heart6.4
Hypothalamus6.4
Kidney7.15
Leukemia_chronicMyelogenousK-5624.5
Leukemia_promyelocytic-HL-604.4
Leukemialymphoblastic(MOLT-4)4
Liver6.75
Lung5.5
Lymphnode4.3
Lymphoma_burkitts(Daudi)6.6
Lymphoma_burkitts(Raji)7.25
MedullaOblongata4.55
OccipitalLobe4.5
OlfactoryBulb7.05
Ovary3.35
Pancreas4.05
PancreaticIslet5.35
ParietalLobe5.55
Pituitary5.85
Placenta5
Pons4.7
PrefrontalCortex6.2
Prostate5.7
Salivarygland4
SkeletalMuscle5.75
Skin3.85
SmoothMuscle5.65
Spinalcord16.5
SubthalamicNucleus4.6
SuperiorCervicalGanglion5.6
TemporalLobe4.55
Testis4.3
TestisGermCell3.95
TestisIntersitial4.05
TestisLeydigCell4.9
TestisSeminiferousTubule4.2
Thalamus5.05
Thymus3.8
Thyroid6.25
Tongue4.95
Tonsil4.8
Trachea4.15
TrigeminalGanglion5.2
Uterus3.95
UterusCorpus4.45
WholeBlood5.35
Wholebrain4.5
colon5
pineal_day6.06
pineal_night6.02
retina8.2
small_intestine4.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7784_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.86 ± 0.48
Basal Forebrain6.6 ± 0.28
Basal Part of Pons6.3 ± 0.14
Cerebellar Cortex6.5 ± 0.47
Cerebellar Nuclei6.39 ± 0.29
Claustrum7.04 ± 0.55
Epithalamus6.27 ± 0.42
Frontal Lobe6.42 ± 0.36
Globus Pallidus6.89 ± 0.4
Hypothalamus6.26 ± 0.42
Insula6.59 ± 0.3
Limbic Lobe6.75 ± 0.4
Mesencephalon6.5 ± 0.47
Myelencephalon6.56 ± 0.41
Occipital Lobe6.73 ± 0.46
Parietal Lobe6.55 ± 0.48
Pontine Tegmentum6.48 ± 0.41
Striatum6.84 ± 0.41
Subthalamus6.43 ± 0.66
Temporal Lobe6.44 ± 0.47
Thalamus6.4 ± 0.43
White Matter6.98 ± 0.22
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Gal3st1CBCerebellum0
0
Gal3st1CTXCerebral cortex0
0
Gal3st1HIPHippocampal region0
0
Gal3st1HPFHippocampal formation0
0
Gal3st1HYHypothalamus0
0
Gal3st1LSXLateral septal complex0
0
Gal3st1MBMidbrain0
0
Gal3st1MYMedulla0
0
Gal3st1OLFOlfactory bulb0
0
Gal3st1PPons0
0
Gal3st1PALPallidum0
0
Gal3st1RHPRetrohippocampal region0
0
Gal3st1sAMYStriatum-like amygdalar nuclei0
0
Gal3st1STRStriatum0
0
Gal3st1STRdStriatum dorsal region0
0
Gal3st1STRvStriatum ventral region0
0
Gal3st1THThalamus0
0
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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