AutismKB 2.0

Annotation Detail for BAG4


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Basic Information Top
Gene Symbol:BAG4 ( BAG-4,SODD )
Gene Full Name: BCL2-associated athanogene 4
Band: 8p11.23
Quick LinksEntrez ID:9530; OMIM: 603884; Uniprot ID:BAG4_HUMAN; ENSEMBL ID: ENSG00000156735; HGNC ID: 940
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus21 / 56401237
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult28 / 193912114
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor2 / 9417821
cervical tumor2 / 3436658
chondrosarcoma1 / 8282312
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor3 / 26384511
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia3 / 9584231
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal67 / 336030719
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor4 / 12494932
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain16 / 110098914
cervix2 / 4817141
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye6 / 21105428
heart2 / 8962622
intestine5 / 23447221
kidney4 / 21177718
larynx0 / 241450 
liver4 / 20774319
lung3 / 3369748
lymph0 / 442700 
lymph node1 / 9161010
mammary gland5 / 15327132
mouth1 / 6705214
muscle2 / 10771518
nerve0 / 157680 
ovary1 / 1020519
pancreas0 / 2148120 
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta5 / 28082517
prostate2 / 18934510
salivary gland0 / 201550 
skin4 / 21057418
spleen1 / 5395218
stomach2 / 9661920
testis2 / 3304426
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219624_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.45
Adipocyte5.2
AdrenalCortex6.1
Adrenalgland4.65
Amygdala5.4
Appendix6.55
AtrioventricularNode4.6
BDCA4+_DentriticCells5.65
Bonemarrow5.55
BronchialEpithelialCells5.1
CD105+_Endothelial5.3
CD14+_Monocytes6.5
CD19+_BCells(neg._sel.)5.55
CD33+_Myeloid8.6
CD34+6.55
CD4+_Tcells5.5
CD56+_NKCells6.05
CD71+_EarlyErythroid5.05
CD8+_Tcells4.9
CardiacMyocytes7.55
Caudatenucleus4.8
Cerebellum4.35
CerebellumPeduncles6.5
CiliaryGanglion4.15
CingulateCortex5.65
Colorectaladenocarcinoma5.3
DorsalRootGanglion4.4
FetalThyroid5.2
Fetalbrain5.15
Fetalliver4.7
Fetallung4.15
GlobusPallidus4.1
Heart7.7
Hypothalamus5.6
Kidney5.1
Leukemia_chronicMyelogenousK-5624.8
Leukemia_promyelocytic-HL-604.65
Leukemialymphoblastic(MOLT-4)4.15
Liver7.5
Lung5.8
Lymphnode4.45
Lymphoma_burkitts(Daudi)6.95
Lymphoma_burkitts(Raji)7.85
MedullaOblongata4.75
OccipitalLobe4.7
OlfactoryBulb4.15
Ovary3.65
Pancreas4.4
PancreaticIslet5.75
ParietalLobe5.85
Pituitary6.2
Placenta5.3
Pons5.25
PrefrontalCortex6.45
Prostate6.1
Salivarygland4.5
SkeletalMuscle6.9
Skin4.9
SmoothMuscle5.95
Spinalcord5.65
SubthalamicNucleus4.95
SuperiorCervicalGanglion9.3
TemporalLobe5
Testis4.5
TestisGermCell4.25
TestisIntersitial4.5
TestisLeydigCell5.4
TestisSeminiferousTubule4.5
Thalamus5.5
Thymus4.05
Thyroid6.5
Tongue5.65
Tonsil5.2
Trachea4.45
TrigeminalGanglion6.4
Uterus4.25
UterusCorpus5.05
WholeBlood5.75
Wholebrain4.3
colon5.3
pineal_day6.54
pineal_night6.42
retina6.45
small_intestine5.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_811_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.4 ± 0.95
Basal Forebrain1.96 ± 0.22
Basal Part of Pons1.73 ± 0.48
Cerebellar Cortex1.78 ± 0.62
Cerebellar Nuclei2.24 ± 0.68
Claustrum2.85 ± 0.88
Epithalamus1.67 ± 0.77
Frontal Lobe1.78 ± 0.61
Globus Pallidus2.46 ± 0.24
Hypothalamus1.97 ± 0.62
Insula1.82 ± 0.52
Limbic Lobe1.94 ± 0.6
Mesencephalon2.12 ± 0.68
Myelencephalon1.98 ± 0.66
Occipital Lobe2.04 ± 0.6
Parietal Lobe2.03 ± 0.76
Pontine Tegmentum1.97 ± 0.63
Striatum2.2 ± 0.68
Subthalamus2.12 ± 0.7
Temporal Lobe1.85 ± 0.6
Thalamus1.93 ± 0.57
White Matter2.5 ± 0.29
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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