Annotation Detail for GMFG
Basic Information Top
| Gene Symbol: | GMFG ( GMF-GAMMA,MGC126867 ) |
|---|---|
| Gene Full Name: | glia maturation factor, gamma |
| Band: | 19q13.2 |
| Quick Links | Entrez ID:9535; OMIM: 604104; Uniprot ID:GMFG_HUMAN; ENSEMBL ID: ENSG00000130755; HGNC ID: 4374 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.5210
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 29 / 564012 | 51 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 44 / 1939121 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 6 / 71755 | 83 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 111 / 3360307 | 33 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 |  |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 15 / 123478 | 121 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 12 / 48801 | 245 |  |
| brain | 3 / 1100989 | 2 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 4 / 89626 | 44 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 14 / 336974 | 41 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 9 / 91610 | 98 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 5 / 41328 | 120 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 6 / 330442 | 18 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 204220_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 40.95 | |
| Adipocyte | 4.75 | |
| AdrenalCortex | 5.75 | |
| Adrenalgland | 4.05 | |
| Amygdala | 4.95 | |
| Appendix | 5.2 | |
| AtrioventricularNode | 3.85 | |
| BDCA4+_DentriticCells | 662.15 | |
| Bonemarrow | 245.55 | |
| BronchialEpithelialCells | 4.45 | |
| CD105+_Endothelial | 259.65 | |
| CD14+_Monocytes | 1459.8 |  |
| CD19+_BCells(neg._sel.) | 977.9 | |
| CD33+_Myeloid | 1375.5 | |
| CD34+ | 1227.75 | |
| CD4+_Tcells | 973.9 | |
| CD56+_NKCells | 1211.95 | |
| CD71+_EarlyErythroid | 10.8 | |
| CD8+_Tcells | 772.3 | |
| CardiacMyocytes | 7.2 | |
| Caudatenucleus | 4.4 | |
| Cerebellum | 3.9 | |
| CerebellumPeduncles | 5.6 | |
| CiliaryGanglion | 3.75 | |
| CingulateCortex | 5.1 | |
| Colorectaladenocarcinoma | 6.2 | |
| DorsalRootGanglion | 3.7 | |
| FetalThyroid | 5.55 | |
| Fetalbrain | 4.5 | |
| Fetalliver | 4.25 | |
| Fetallung | 18.5 | |
| GlobusPallidus | 3.75 | |
| Heart | 8.95 | |
| Hypothalamus | 5.25 | |
| Kidney | 3.9 | |
| Leukemia_chronicMyelogenousK-562 | 6.55 | |
| Leukemia_promyelocytic-HL-60 | 4.25 | |
| Leukemialymphoblastic(MOLT-4) | 135.55 | |
| Liver | 6.8 | |
| Lung | 71.7 | |
| Lymphnode | 96.5 | |
| Lymphoma_burkitts(Daudi) | 201.85 | |
| Lymphoma_burkitts(Raji) | 7.35 | |
| MedullaOblongata | 4.25 | |
| OccipitalLobe | 4.4 | |
| OlfactoryBulb | 3.8 | |
| Ovary | 3.4 | |
| Pancreas | 4.05 | |
| PancreaticIslet | 10.55 | |
| ParietalLobe | 5.15 | |
| Pituitary | 5.6 | |
| Placenta | 13.15 | |
| Pons | 4.7 | |
| PrefrontalCortex | 5.5 | |
| Prostate | 6.15 | |
| Salivarygland | 6.05 | |
| SkeletalMuscle | 9.85 | |
| Skin | 3.7 | |
| SmoothMuscle | 5.05 | |
| Spinalcord | 5.25 | |
| SubthalamicNucleus | 4.45 | |
| SuperiorCervicalGanglion | 5.4 | |
| TemporalLobe | 4.5 | |
| Testis | 4.15 | |
| TestisGermCell | 3.95 | |
| TestisIntersitial | 4.05 | |
| TestisLeydigCell | 4.85 | |
| TestisSeminiferousTubule | 4.15 | |
| Thalamus | 5 | |
| Thymus | 356.3 | |
| Thyroid | 6.2 | |
| Tongue | 5.1 | |
| Tonsil | 65.65 | |
| Trachea | 4.05 | |
| TrigeminalGanglion | 5.2 | |
| Uterus | 4 | |
| UterusCorpus | 4.35 | |
| WholeBlood | 1576.45 | |
| Wholebrain | 3.9 | |
| colon | 4.9 | |
| pineal_day | 6.32 | |
| pineal_night | 5.94 | |
| retina | 5.9 | |
| small_intestine | 6.25 | |
- Probe name: CUST_10353_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.87 ± 0.57 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.92 ± 0.38 | |
| Basal Part of Pons | 4.5 ± 0.59 | |
| Cerebellar Cortex | 3.6 ± 0.37 | |
| Cerebellar Nuclei | 4.77 ± 0.37 | |
| Claustrum | 3.8 ± 1.05 | |
| Epithalamus | 4.36 ± 0.69 | |
| Frontal Lobe | 4.04 ± 0.47 | |
| Globus Pallidus | 5.16 ± 0.28 | |
| Hypothalamus | 3.9 ± 1.07 | |
| Insula | 3.98 ± 0.31 | |
| Limbic Lobe | 3.87 ± 0.64 | |
| Mesencephalon | 4.02 ± 0.66 | |
| Myelencephalon | 4.05 ± 0.62 | |
| Occipital Lobe | 3.8 ± 0.48 | |
| Parietal Lobe | 3.79 ± 0.7 | |
| Pontine Tegmentum | 3.99 ± 0.55 | |
| Striatum | 4.66 ± 0.44 | |
| Subthalamus | 4.2 ± 0.18 | |
| Temporal Lobe | 4.01 ± 0.57 | |
| Thalamus | 4.02 ± 0.51 | |
| White Matter | 4.78 ± 0.59 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gmfg | CB | Cerebellum | 4.36 | |
| 7.98 | | |||
| Gmfg | CTX | Cerebral cortex | 2.8 | |
| 3.37 | | |||
| Gmfg | HIP | Hippocampal region | 1.25 | |
| 1.65 | | |||
| Gmfg | HPF | Hippocampal formation | 1.51 | |
| 1.87 | | |||
| Gmfg | HY | Hypothalamus | 0.28 | |
| 0.43 | | |||
| Gmfg | LSX | Lateral septal complex | 0.81 | |
| 1.41 | | |||
| Gmfg | MB | Midbrain | 1.41 | |
| 2.03 | | |||
| Gmfg | MY | Medulla | 0.62 | |
| 1.2 | | |||
| Gmfg | OLF | Olfactory bulb | 1.48 | |
| 1.55 | | |||
| Gmfg | P | Pons | 0.83 | |
| 1.89 | | |||
| Gmfg | PAL | Pallidum | 0.28 | |
| 0.32 | | |||
| Gmfg | RHP | Retrohippocampal region | 1.63 | |
| 1.68 | | |||
| Gmfg | sAMY | Striatum-like amygdalar nuclei | 0.44 | |
| 0.49 | | |||
| Gmfg | STR | Striatum | 2.86 | |
| 3.89 | | |||
| Gmfg | STRd | Striatum dorsal region | 4.02 | |
| 5.58 | | |||
| Gmfg | STRv | Striatum ventral region | 0.58 | |
| 0.54 | | |||
| Gmfg | TH | Thalamus | 4.32 | |
| 6.24 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| GMFG_HUMAN_0 | 0 | 0 | 0 | LVQTAELTK | PRIDE |
| GMFG_HUMAN_0 | 0 | 0 | 0 | TTDDLTEAWLQEK | PRIDE |
| GMFG_HUMAN_110 | 9 | 110 | 118 | LVQTAELTK | PRIDE |
| GMFG_HUMAN_124 | 13 | 124 | 136 | TTDDLTEAWLQEK | PRIDE |
| GMFG_HUMAN_2 | 18 | 2 | 19 | SDSLVVCEVDPELTEKLR | PRIDE |
| GMFG_HUMAN_25 | 10 | 25 | 34 | ETDNAAIIMK | PRIDE |
| GMFG_HUMAN_40 | 18 | 40 | 57 | QMVVLEEEFQNISPEELK | PRIDE |
| GMFG_HUMAN_41 | 18 | 41 | 58 | QMVVLEEEFQNISPEELK | PRIDE |
| GMFG_HUMAN_58 | 9 | 58 | 66 | MELPERQPR | PRIDE |
| PAp00028571 | 27 | 82 | 108 | VSYPLCFIFSSPVGCKPEQQMMYAGSK | Peptide Atlas |