Annotation Detail for IGDCC3
Basic Information Top
| Gene Symbol: | IGDCC3 ( HsT18880,PUNC ) |
|---|---|
| Gene Full Name: | immunoglobulin superfamily, DCC subclass, member 3 |
| Band: | 15q22.31 |
| Quick Links | Entrez ID:9543; OMIM: 604184; Uniprot ID:IGDC3_HUMAN; ENSEMBL ID: ENSG00000174498; HGNC ID: 9700 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.128292
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 10 / 70761 | 141 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 3 / 1939121 | 1 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 39 / 3360307 | 11 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 5 / 46356 | 107 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 12 / 1100989 | 10 |  |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 19 / 215722 | 88 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_9567_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.94 ± 1.07 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.41 ± 0.21 | |
| Basal Part of Pons | 1.18 ± 0.33 | |
| Cerebellar Cortex | 1.6 ± 0.81 | |
| Cerebellar Nuclei | 1.78 ± 0.76 | |
| Claustrum | 2.37 ± 0.84 | |
| Epithalamus | 1.2 ± 0.82 | |
| Frontal Lobe | 1.37 ± 0.69 | |
| Globus Pallidus | 1.89 ± 0.35 | |
| Hypothalamus | 1.5 ± 0.74 | |
| Insula | 1.37 ± 0.57 | |
| Limbic Lobe | 1.57 ± 0.68 | |
| Mesencephalon | 1.72 ± 0.73 | |
| Myelencephalon | 1.56 ± 0.73 | |
| Occipital Lobe | 1.65 ± 0.74 | |
| Parietal Lobe | 1.74 ± 0.85 | |
| Pontine Tegmentum | 1.56 ± 0.63 | |
| Striatum | 1.52 ± 0.54 | |
| Subthalamus | 1.94 ± 0.28 | |
| Temporal Lobe | 1.42 ± 0.64 | |
| Thalamus | 1.54 ± 0.66 | |
| White Matter | 1.8 ± 0.14 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Punc | CB | Cerebellum | 3.69 | |
| 3.37 | | |||
| Punc | CTX | Cerebral cortex | 6.73 | |
| 3.02 | | |||
| Punc | HIP | Hippocampal region | 4.98 | |
| 3.16 | | |||
| Punc | HPF | Hippocampal formation | 4.94 | |
| 2.66 | | |||
| Punc | HY | Hypothalamus | 0.49 | |
| 0.24 | | |||
| Punc | LSX | Lateral septal complex | 5.05 | |
| 1.81 | | |||
| Punc | MB | Midbrain | 2.28 | |
| 2.05 | | |||
| Punc | MY | Medulla | 3.09 | |
| 2.04 | | |||
| Punc | OLF | Olfactory bulb | 7.34 | |
| 3.29 | | |||
| Punc | P | Pons | 4.14 | |
| 4.04 | | |||
| Punc | PAL | Pallidum | 1.52 | |
| 0.71 | | |||
| Punc | RHP | Retrohippocampal region | 4.97 | |
| 1.99 | | |||
| Punc | sAMY | Striatum-like amygdalar nuclei | 1.16 | |
| 0.52 | | |||
| Punc | STR | Striatum | 1.15 | |
| 0.53 | | |||
| Punc | STRd | Striatum dorsal region | 0.52 | |
| 0.3 | | |||
| Punc | STRv | Striatum ventral region | 1.88 | |
| 0.87 | | |||
| Punc | TH | Thalamus | 0.52 | |
| 0.33 | |