AutismKB 2.0

Annotation Detail for CYTIP


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Basic Information Top
Gene Symbol:CYTIP ( B3-1,CASP,CYBR,CYTHIP,HE,PSCDBP )
Gene Full Name: cytohesin 1 interacting protein
Band: 2q24.1
Quick LinksEntrez ID:9595; OMIM: 604448; Uniprot ID:CYTIP_HUMAN; ENSEMBL ID: ENSG00000115165; HGNC ID: 9506
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus8 / 56401214
neonate1 / 3109732
infant0 / 236200 
juvenile1 / 5555617
adult63 / 193912132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor8 / 26384530
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia4 / 9584241
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma11 / 71755153
non-neoplasia7 / 9725071
normal106 / 336030731
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor21 / 125191167
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood25 / 123478202
bone0 / 716550 
bone marrow9 / 48801184
brain5 / 11009894
cervix0 / 481710 
connective tissue28 / 149255187
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine6 / 23447225
kidney7 / 21177733
larynx0 / 241450 
liver1 / 2077434
lung16 / 33697447
lymph2 / 4427045
lymph node20 / 91610218
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx10 / 41328241
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate2 / 18934510
salivary gland0 / 201550 
skin2 / 2105749
spleen6 / 53952111
stomach5 / 9661951
testis3 / 3304429
thymus12 / 81131147
thyroid0 / 474730 
tonsil0 / 169990 
trachea7 / 52413133
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209606_at
Cell line Expression level Expression bar
721_B_lymphoblasts412.8
Adipocyte9.3
AdrenalCortex14.3
Adrenalgland8.85
Amygdala8.7
Appendix17.25
AtrioventricularNode13.15
BDCA4+_DentriticCells525
Bonemarrow84.45
BronchialEpithelialCells8.7
CD105+_Endothelial20.9
CD14+_Monocytes369.95
CD19+_BCells(neg._sel.)631.85
CD33+_Myeloid703.4
CD34+38
CD4+_Tcells884.2
CD56+_NKCells1102.6
CD71+_EarlyErythroid9.45
CD8+_Tcells752.9
CardiacMyocytes14.9
Caudatenucleus9.1
Cerebellum8.15
CerebellumPeduncles12.95
CiliaryGanglion11.8
CingulateCortex10.7
Colorectaladenocarcinoma9.4
DorsalRootGanglion13.55
FetalThyroid10.5
Fetalbrain9.6
Fetalliver8.8
Fetallung10.55
GlobusPallidus8.7
Heart15.3
Hypothalamus9.8
Kidney9.9
Leukemia_chronicMyelogenousK-56211.6
Leukemia_promyelocytic-HL-6038.95
Leukemialymphoblastic(MOLT-4)6.95
Liver14.2
Lung29
Lymphnode259.7
Lymphoma_burkitts(Daudi)50.65
Lymphoma_burkitts(Raji)48.75
MedullaOblongata9.05
OccipitalLobe8.8
OlfactoryBulb8.7
Ovary8.2
Pancreas8.8
PancreaticIslet10.9
ParietalLobe12
Pituitary11.9
Placenta9.7
Pons11.95
PrefrontalCortex12.15
Prostate10.45
Salivarygland87.35
SkeletalMuscle15.95
Skin11.2
SmoothMuscle10.8
Spinalcord10.7
SubthalamicNucleus10.1
SuperiorCervicalGanglion26.1
TemporalLobe10.05
Testis8.25
TestisGermCell7.85
TestisIntersitial8.75
TestisLeydigCell10.7
TestisSeminiferousTubule8.9
Thalamus10.4
Thymus48.9
Thyroid10.5
Tongue11.95
Tonsil123.6
Trachea10.45
TrigeminalGanglion16.35
Uterus7.45
UterusCorpus11.55
WholeBlood1097.1
Wholebrain7.35
colon12.2
pineal_day11.58
pineal_night11.74
retina13.95
small_intestine50.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6530_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.43 ± 1
Basal Forebrain2.01 ± 0.25
Basal Part of Pons1.68 ± 0.32
Cerebellar Cortex1.87 ± 0.78
Cerebellar Nuclei2.31 ± 0.7
Claustrum2.88 ± 0.85
Epithalamus2.12 ± 0.56
Frontal Lobe1.9 ± 0.7
Globus Pallidus2.66 ± 0.51
Hypothalamus2.12 ± 0.77
Insula1.95 ± 0.51
Limbic Lobe1.98 ± 0.57
Mesencephalon2.16 ± 0.65
Myelencephalon2.05 ± 0.62
Occipital Lobe2.07 ± 0.77
Parietal Lobe1.98 ± 0.64
Pontine Tegmentum2.13 ± 0.72
Striatum2.15 ± 0.44
Subthalamus2.2 ± 0.7
Temporal Lobe1.93 ± 0.59
Thalamus1.96 ± 0.56
White Matter2.95 ± 1.17
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
PscdbpCBCerebellum0.39
0.52
PscdbpCTXCerebral cortex0.35
0.52
PscdbpHIPHippocampal region0.09
0.12
PscdbpHPFHippocampal formation0.17
0.19
PscdbpHYHypothalamus0.26
0.22
PscdbpLSXLateral septal complex0.19
0.22
PscdbpMBMidbrain0.14
0.15
PscdbpMYMedulla0.27
0.25
PscdbpOLFOlfactory bulb0.63
1
PscdbpPPons0.21
0.17
PscdbpPALPallidum0.15
0.17
PscdbpRHPRetrohippocampal region0.26
0.26
PscdbpsAMYStriatum-like amygdalar nuclei0.16
0.1
PscdbpSTRStriatum0.21
0.29
PscdbpSTRdStriatum dorsal region0.17
0.21
PscdbpSTRvStriatum ventral region0.32
0.66
PscdbpTHThalamus0.31
0.31
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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