AutismKB 2.0

Annotation Detail for CD47


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Basic Information Top
Gene Symbol:CD47 ( IAP,MER6,OA3 )
Gene Full Name: CD47 molecule
Band: 3q13.12
Quick LinksEntrez ID:961; OMIM: 601028; Uniprot ID:CD47_HUMAN; ENSEMBL ID: ENSG00000196776; HGNC ID: 1682
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus53 / 56401293
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult240 / 1939121123
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor13 / 94178138
cervical tumor0 / 343660 
chondrosarcoma9 / 82823108
colorectal tumor14 / 114246122
esophageal tumor9 / 17290520
gastrointestinal tumor10 / 11936983
germ cell tumor5 / 26384518
glioma3 / 10688328
head and neck tumor13 / 13630295
kidney tumor8 / 68959116
leukemia11 / 95842114
liver tumor0 / 963590 
lung tumor14 / 103127135
lymphoma0 / 717550 
non-neoplasia6 / 9725061
normal284 / 336030784
ovarian tumor24 / 76682312
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer3 / 10268029
retinoblastoma1 / 4635621
skin tumor4 / 12494932
soft tissue/muscle tissue tumor48 / 125191383
uterine tumor28 / 90257310
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland3 / 3319790
ascites1 / 4001524
bladder1 / 2975733
blood10 / 12347880
bone3 / 7165541
bone marrow4 / 4880181
brain101 / 110098991
cervix2 / 4817141
connective tissue52 / 149255348
ear2 / 16212123
embryonic tissue10 / 21572246
esophagus9 / 20209445
eye15 / 21105471
heart7 / 8962678
intestine19 / 23447281
kidney13 / 21177761
larynx6 / 24145248
liver2 / 2077439
lung37 / 336974109
lymph0 / 442700 
lymph node13 / 91610141
mammary gland23 / 153271150
mouth2 / 6705229
muscle14 / 107715129
nerve1 / 1576863
ovary25 / 102051244
pancreas10 / 21481246
parathyroid0 / 205390 
pharynx3 / 4132872
pituitary gland1 / 1658560
placenta36 / 280825128
prostate11 / 18934558
salivary gland0 / 201550 
skin11 / 21057452
spleen3 / 5395255
stomach14 / 96619144
testis17 / 33044251
thymus8 / 8113198
thyroid4 / 4747384
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus34 / 232878145
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213857_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts567.65
Adipocyte116.45
AdrenalCortex171.15
Adrenalgland179
Amygdala135.95
Appendix101.3
AtrioventricularNode54.45
BDCA4+_DentriticCells824.1
Bonemarrow253.9
BronchialEpithelialCells426.8
CD105+_Endothelial846.85
CD14+_Monocytes524.85
CD19+_BCells(neg._sel.)815.6
CD33+_Myeloid634.4
CD34+921.65
CD4+_Tcells682.6
CD56+_NKCells1279.5
CD71+_EarlyErythroid693.05
CD8+_Tcells945.2
CardiacMyocytes103.25
Caudatenucleus104.7
Cerebellum54.2
CerebellumPeduncles67.55
CiliaryGanglion47.75
CingulateCortex112.5
Colorectaladenocarcinoma108.8
DorsalRootGanglion76.3
FetalThyroid257.3
Fetalbrain131.15
Fetalliver151.1
Fetallung542.9
GlobusPallidus46.4
Heart54
Hypothalamus248.25
Kidney45.25
Leukemia_chronicMyelogenousK-562252.4
Leukemia_promyelocytic-HL-60620.9
Leukemialymphoblastic(MOLT-4)927.7
Liver101.85
Lung558.05
Lymphnode541.25
Lymphoma_burkitts(Daudi)426.7
Lymphoma_burkitts(Raji)904.05
MedullaOblongata87.3
OccipitalLobe151.65
OlfactoryBulb210.1
Ovary40.85
Pancreas188.9
PancreaticIslet425.4
ParietalLobe149.1
Pituitary260.45
Placenta415.5
Pons64.5
PrefrontalCortex207.5
Prostate969.2
Salivarygland243.15
SkeletalMuscle70.85
Skin93.4
SmoothMuscle427.2
Spinalcord205.5
SubthalamicNucleus61.9
SuperiorCervicalGanglion41.95
TemporalLobe60.35
Testis232.3
TestisGermCell194.5
TestisIntersitial198.7
TestisLeydigCell120.35
TestisSeminiferousTubule141.15
Thalamus110.75
Thymus341.15
Thyroid464.05
Tongue294.05
Tonsil434.45
Trachea199.15
TrigeminalGanglion53.7
Uterus149.9
UterusCorpus48.25
WholeBlood578.75
Wholebrain127.45
colon381.75
pineal_day570.34
pineal_night468.84
retina143.975
small_intestine308.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P6935
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.15 ± 0.46
Basal Forebrain8.33 ± 0.24
Basal Part of Pons8.48 ± 0.26
Cerebellar Cortex8.65 ± 0.19
Cerebellar Nuclei8.21 ± 0.5
Claustrum7.92 ± 0.64
Epithalamus8.52 ± 0.21
Frontal Lobe8.51 ± 0.32
Globus Pallidus8.17 ± 0.22
Hypothalamus8.52 ± 0.33
Insula8.45 ± 0.38
Limbic Lobe8.09 ± 0.43
Mesencephalon8.32 ± 0.51
Myelencephalon8.3 ± 0.46
Occipital Lobe8.26 ± 0.36
Parietal Lobe8.37 ± 0.46
Pontine Tegmentum8.36 ± 0.33
Striatum7.94 ± 0.35
Subthalamus8.15 ± 0.57
Temporal Lobe8.4 ± 0.36
Thalamus8.4 ± 0.35
White Matter9.31 ± 0.43
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cd47CBCerebellum86.38
100
Cd47CTXCerebral cortex100
100
Cd47HIPHippocampal region100
100
Cd47HPFHippocampal formation100
100
Cd47HYHypothalamus100
100
Cd47LSXLateral septal complex100
100
Cd47MBMidbrain100
100
Cd47MYMedulla97.81
100
Cd47OLFOlfactory bulb100
100
Cd47PPons100
100
Cd47PALPallidum100
100
Cd47RHPRetrohippocampal region100
100
Cd47sAMYStriatum-like amygdalar nuclei100
100
Cd47STRStriatum100
100
Cd47STRdStriatum dorsal region100
100
Cd47STRvStriatum ventral region100
100
Cd47THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CD47_HUMAN_305 10 305 314 AVEEPLNAFK PRIDE
CD47_HUMAN_75 11 75 85 STVPTDFSSAK PRIDE
CD47_HUMAN_86 8 86 93 IEVSQLLK PRIDE
PAp00037955 19 75 93 STVPTDFSSAKIEVSQLLK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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