AutismKB 2.0

Annotation Detail for SNCAIP


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Basic Information Top
Gene Symbol:SNCAIP ( MGC39814,SYPH1,Sph1 )
Gene Full Name: synuclein, alpha interacting protein
Band: 5q23.2
Quick LinksEntrez ID:9627; OMIM: 603779; Uniprot ID:SNCAP_HUMAN; ENSEMBL ID: ENSG00000064692; HGNC ID: 11139
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus32 / 56401256
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult31 / 193912115
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor21 / 26384579
glioma7 / 10688365
head and neck tumor10 / 13630273
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma4 / 7175555
non-neoplasia0 / 972500 
normal65 / 336030719
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain37 / 110098933
cervix0 / 481710 
connective tissue5 / 14925533
ear2 / 16212123
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye2 / 2110549
heart1 / 8962611
intestine2 / 2344728
kidney0 / 2117770 
larynx2 / 2414582
liver1 / 2077434
lung21 / 33697462
lymph0 / 442700 
lymph node5 / 9161054
mammary gland0 / 1532710 
mouth8 / 67052119
muscle2 / 10771518
nerve0 / 157680 
ovary1 / 1020519
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen1 / 5395218
stomach0 / 966190 
testis19 / 33044257
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219511_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.2
Adipocyte5.25
AdrenalCortex5.95
Adrenalgland4.75
Amygdala5.65
Appendix5.95
AtrioventricularNode6.4
BDCA4+_DentriticCells5.45
Bonemarrow5.6
BronchialEpithelialCells5.3
CD105+_Endothelial5.35
CD14+_Monocytes5.7
CD19+_BCells(neg._sel.)5.6
CD33+_Myeloid6.65
CD34+6.5
CD4+_Tcells5.45
CD56+_NKCells6.25
CD71+_EarlyErythroid5.1
CD8+_Tcells4.95
CardiacMyocytes7.85
Caudatenucleus6.2
Cerebellum5.35
CerebellumPeduncles8
CiliaryGanglion4.25
CingulateCortex5.65
Colorectaladenocarcinoma5.3
DorsalRootGanglion4.4
FetalThyroid5.3
Fetalbrain12.55
Fetalliver4.8
Fetallung4.95
GlobusPallidus4.05
Heart6.95
Hypothalamus5.8
Kidney4.7
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.8
Leukemialymphoblastic(MOLT-4)4.25
Liver7.4
Lung6.05
Lymphnode4.85
Lymphoma_burkitts(Daudi)7.05
Lymphoma_burkitts(Raji)7.6
MedullaOblongata5
OccipitalLobe4.8
OlfactoryBulb4.3
Ovary6.5
Pancreas4.4
PancreaticIslet5.75
ParietalLobe5.75
Pituitary6.4
Placenta5.4
Pons5.25
PrefrontalCortex6.55
Prostate6.35
Salivarygland4.45
SkeletalMuscle7
Skin4.55
SmoothMuscle5.95
Spinalcord5.9
SubthalamicNucleus5.2
SuperiorCervicalGanglion6.95
TemporalLobe5
Testis5.2
TestisGermCell5.05
TestisIntersitial5
TestisLeydigCell7.3
TestisSeminiferousTubule6.75
Thalamus5.55
Thymus4.3
Thyroid6.55
Tongue5.7
Tonsil5.25
Trachea4.55
TrigeminalGanglion6.5
Uterus26.45
UterusCorpus89.7
WholeBlood5.85
Wholebrain4.65
colon5.4
pineal_day6.58
pineal_night6.5
retina7.775
small_intestine5.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_594_PI416408490
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.09 ± 0.79
Basal Forebrain5.47 ± 0.33
Basal Part of Pons4.55 ± 1.01
Cerebellar Cortex5.55 ± 0.34
Cerebellar Nuclei4.17 ± 0.29
Claustrum4.83 ± 0.7
Epithalamus6.31 ± 0.8
Frontal Lobe4.71 ± 0.59
Globus Pallidus5 ± 1.12
Hypothalamus4.91 ± 0.51
Insula4.64 ± 0.45
Limbic Lobe4.86 ± 0.9
Mesencephalon5.08 ± 0.76
Myelencephalon4.97 ± 0.8
Occipital Lobe5.79 ± 0.93
Parietal Lobe4.97 ± 0.65
Pontine Tegmentum5.15 ± 0.69
Striatum6.35 ± 0.96
Subthalamus4.24 ± 0.74
Temporal Lobe4.61 ± 0.6
Thalamus5.42 ± 0.63
White Matter4.35 ± 0.43
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
SncaipHYHypothalamus1.13
0.48
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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