AutismKB 2.0

Annotation Detail for CTR9


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Basic Information Top
Gene Symbol:CTR9 ( KIAA0155,SH2BP1,TSBP,p150,p150TSP )
Gene Full Name: Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
Band: 11p15.4
Quick LinksEntrez ID:9646; OMIM: 609366; Uniprot ID:CTR9_HUMAN; ENSEMBL ID: ENSG00000198730; HGNC ID: 16850
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst7 / 62319112
fetus48 / 56401285
neonate1 / 3109732
infant0 / 236200 
juvenile5 / 5555689
adult120 / 193912161
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor7 / 9417874
cervical tumor2 / 3436658
chondrosarcoma1 / 8282312
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor22 / 26384583
glioma2 / 10688318
head and neck tumor20 / 136302146
kidney tumor5 / 6895972
leukemia4 / 9584241
liver tumor10 / 96359103
lung tumor4 / 10312738
lymphoma4 / 7175555
non-neoplasia5 / 9725051
normal223 / 336030766
ovarian tumor3 / 7668239
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer4 / 10268038
retinoblastoma1 / 4635621
skin tumor4 / 12494932
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites1 / 4001524
bladder2 / 2975767
blood3 / 12347824
bone3 / 7165541
bone marrow3 / 4880161
brain53 / 110098948
cervix2 / 4817141
connective tissue6 / 14925540
ear3 / 16212185
embryonic tissue19 / 21572288
esophagus0 / 202090 
eye12 / 21105456
heart3 / 8962633
intestine14 / 23447259
kidney22 / 211777103
larynx9 / 24145372
liver15 / 20774372
lung15 / 33697444
lymph3 / 4427067
lymph node7 / 9161076
mammary gland10 / 15327165
mouth9 / 67052134
muscle10 / 10771592
nerve3 / 15768190
ovary4 / 10205139
pancreas9 / 21481241
parathyroid3 / 20539146
pharynx1 / 4132824
pituitary gland4 / 16585241
placenta5 / 28082517
prostate6 / 18934531
salivary gland1 / 2015549
skin15 / 21057471
spleen9 / 53952166
stomach1 / 9661910
testis43 / 330442130
thymus7 / 8113186
thyroid3 / 4747363
tonsil1 / 1699958
trachea4 / 5241376
umbilical cord0 / 136800 
uterus14 / 23287860
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202060_at
Cell line Expression level Expression bar
721_B_lymphoblasts258.3
Adipocyte30.4
AdrenalCortex22.8
Adrenalgland19
Amygdala96.35
Appendix18.3
AtrioventricularNode14.5
BDCA4+_DentriticCells131
Bonemarrow14.15
BronchialEpithelialCells113.2
CD105+_Endothelial201.75
CD14+_Monocytes155.6
CD19+_BCells(neg._sel.)158.45
CD33+_Myeloid201.8
CD34+316.35
CD4+_Tcells129.8
CD56+_NKCells326.9
CD71+_EarlyErythroid25
CD8+_Tcells259.05
CardiacMyocytes28.35
Caudatenucleus24.7
Cerebellum10.05
CerebellumPeduncles17.9
CiliaryGanglion13.65
CingulateCortex27.85
Colorectaladenocarcinoma301.95
DorsalRootGanglion14
FetalThyroid20.3
Fetalbrain56.6
Fetalliver88.4
Fetallung31.05
GlobusPallidus12
Heart24.05
Hypothalamus44.45
Kidney10.5
Leukemia_chronicMyelogenousK-56274.8
Leukemia_promyelocytic-HL-6041.25
Leukemialymphoblastic(MOLT-4)66
Liver19.25
Lung17.6
Lymphnode80.9
Lymphoma_burkitts(Daudi)24.7
Lymphoma_burkitts(Raji)28.55
MedullaOblongata18.6
OccipitalLobe25
OlfactoryBulb17.45
Ovary11.7
Pancreas20.4
PancreaticIslet64.25
ParietalLobe16.1
Pituitary70
Placenta22.1
Pons13.2
PrefrontalCortex43
Prostate41.75
Salivarygland18.7
SkeletalMuscle19.05
Skin9.45
SmoothMuscle62.8
Spinalcord27.5
SubthalamicNucleus16.05
SuperiorCervicalGanglion24.65
TemporalLobe17.65
Testis21.95
TestisGermCell86.85
TestisIntersitial66.9
TestisLeydigCell55.95
TestisSeminiferousTubule56.6
Thalamus26.35
Thymus30.4
Thyroid126.7
Tongue18.1
Tonsil54.75
Trachea21.55
TrigeminalGanglion19.4
Uterus83.75
UterusCorpus22.2
WholeBlood170.6
Wholebrain17.55
colon22.15
pineal_day186.4
pineal_night153.64
retina23.35
small_intestine16.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6067_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.78 ± 0.35
Basal Forebrain4.57 ± 0.43
Basal Part of Pons4.53 ± 0.24
Cerebellar Cortex4.52 ± 0.34
Cerebellar Nuclei4.51 ± 0.39
Claustrum4.65 ± 0.59
Epithalamus4.62 ± 0.39
Frontal Lobe4.52 ± 0.4
Globus Pallidus4.81 ± 0.31
Hypothalamus4.25 ± 0.69
Insula4.54 ± 0.37
Limbic Lobe4.72 ± 0.44
Mesencephalon4.73 ± 0.38
Myelencephalon4.64 ± 0.47
Occipital Lobe5 ± 0.44
Parietal Lobe4.58 ± 0.47
Pontine Tegmentum4.65 ± 0.48
Striatum5.16 ± 0.45
Subthalamus4.25 ± 0.38
Temporal Lobe4.6 ± 0.39
Thalamus4.8 ± 0.41
White Matter4.76 ± 0.22
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ctr9CBCerebellum34.6
40.81
Ctr9CTXCerebral cortex58.35
44.59
Ctr9HIPHippocampal region43.55
64.94
Ctr9HPFHippocampal formation45.69
56.38
Ctr9HYHypothalamus10.44
8.87
Ctr9LSXLateral septal complex11.38
8.88
Ctr9MBMidbrain21.93
20.05
Ctr9MYMedulla39.4
43.78
Ctr9OLFOlfactory bulb52.55
47.62
Ctr9PPons32.12
34.31
Ctr9PALPallidum27.81
26.05
Ctr9RHPRetrohippocampal region51.27
42.01
Ctr9sAMYStriatum-like amygdalar nuclei51.9
42.17
Ctr9STRStriatum44.71
34.29
Ctr9STRdStriatum dorsal region49.54
38.15
Ctr9STRvStriatum ventral region41.9
30.37
Ctr9THThalamus51.45
50.3
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002054 11 526 536 EHPNYVDCYLR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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