Annotation Detail for SDC3
Basic Information Top
| Gene Symbol: | SDC3 ( SDCN,SYND3 ) |
|---|---|
| Gene Full Name: | syndecan 3 |
| Band: | 1p35.2 |
| Quick Links | Entrez ID:9672; OMIM: 186357; Uniprot ID:SDC3_HUMAN; ENSEMBL ID: ENSG00000162512; HGNC ID: 10660 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.158287
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 7 / 70761 | 98 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 56 / 564012 | 99 | |
| neonate | 3 / 31097 | 96 | |
| infant | 5 / 23620 | 211 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 81 / 1939121 | 41 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 13 / 263845 | 49 | |
| glioma | 17 / 106883 | 159 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 199 / 3360307 | 59 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 10 / 104616 | 95 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 |  |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 46 / 124949 | 368 | |
| soft tissue/muscle tissue tumor | 13 / 125191 | 103 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 119 / 1100989 | 108 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 19 / 215722 | 88 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 30 / 211054 | 142 | |
| heart | 4 / 89626 | 44 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 2 / 24145 | 82 | |
| liver | 1 / 207743 | 4 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 15 / 107715 | 139 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 11 / 214812 | 51 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 51 / 210574 | 242 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 9 / 330442 | 27 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 4 / 13680 | 292 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P74887
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.33 ± 0.31 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.67 ± 0.42 | |
| Basal Part of Pons | 5.88 ± 0.43 | |
| Cerebellar Cortex | 5.92 ± 0.28 | |
| Cerebellar Nuclei | 6.27 ± 0.6 | |
| Claustrum | 5.97 ± 0.43 | |
| Epithalamus | 6.14 ± 0.53 | |
| Frontal Lobe | 6.32 ± 0.47 | |
| Globus Pallidus | 7.67 ± 0.45 | |
| Hypothalamus | 6.35 ± 0.32 | |
| Insula | 6.43 ± 0.53 | |
| Limbic Lobe | 6.33 ± 0.51 | |
| Mesencephalon | 6.49 ± 0.6 | |
| Myelencephalon | 6.47 ± 0.51 | |
| Occipital Lobe | 6.32 ± 0.41 | |
| Parietal Lobe | 6.19 ± 0.42 | |
| Pontine Tegmentum | 6.39 ± 0.41 | |
| Striatum | 6.54 ± 0.49 | |
| Subthalamus | 6.33 ± 0.56 | |
| Temporal Lobe | 6.48 ± 0.4 | |
| Thalamus | 6.59 ± 0.57 | |
| White Matter | 6 ± 0.39 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sdc3 | CB | Cerebellum | 50.83 | |
| 95.66 | | |||
| Sdc3 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Sdc3 | HIP | Hippocampal region | 73.28 | |
| 100 | | |||
| Sdc3 | HPF | Hippocampal formation | 93.66 | |
| 100 | | |||
| Sdc3 | HY | Hypothalamus | 100 | |
| 100 | | |||
| Sdc3 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Sdc3 | MB | Midbrain | 82.33 | |
| 84.85 | | |||
| Sdc3 | MY | Medulla | 64.12 | |
| 86.94 | | |||
| Sdc3 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Sdc3 | P | Pons | 75.01 | |
| 100 | | |||
| Sdc3 | PAL | Pallidum | 82.29 | |
| 86.42 | | |||
| Sdc3 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Sdc3 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Sdc3 | STR | Striatum | 70.49 | |
| 60.83 | | |||
| Sdc3 | STRd | Striatum dorsal region | 57.53 | |
| 48.67 | | |||
| Sdc3 | STRv | Striatum ventral region | 65.38 | |
| 51.22 | | |||
| Sdc3 | TH | Thalamus | 98.81 | |
| 100 | |