AutismKB 2.0

Annotation Detail for CD69


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Basic Information Top
Gene Symbol:CD69 ( CLEC2C )
Gene Full Name: CD69 molecule
Band: 12p13.31
Quick LinksEntrez ID:969; OMIM: 107273; Uniprot ID:CD69_HUMAN; ENSEMBL ID: ENSG00000110848; HGNC ID: 1694
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult31 / 193912115
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia5 / 9584252
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia2 / 9725020
normal165 / 336030749
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder3 / 29757100
blood104 / 123478842
bone0 / 716550 
bone marrow12 / 48801245
brain5 / 11009894
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus1 / 2020949
eye2 / 2110549
heart0 / 896260 
intestine2 / 2344728
kidney1 / 2117774
larynx0 / 241450 
liver1 / 2077434
lung8 / 33697423
lymph0 / 442700 
lymph node9 / 9161098
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary4 / 10205139
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta1 / 2808253
prostate3 / 18934515
salivary gland1 / 2015549
skin0 / 2105740 
spleen1 / 5395218
stomach1 / 9661910
testis0 / 3304420 
thymus12 / 81131147
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209795_at
Cell line Expression level Expression bar
721_B_lymphoblasts26.3
Adipocyte5.7
AdrenalCortex6.85
Adrenalgland5.05
Amygdala5.9
Appendix6.9
AtrioventricularNode6.1
BDCA4+_DentriticCells108.45
Bonemarrow6.35
BronchialEpithelialCells5.6
CD105+_Endothelial17.8
CD14+_Monocytes6.85
CD19+_BCells(neg._sel.)958.95
CD33+_Myeloid7.65
CD34+132.7
CD4+_Tcells910.65
CD56+_NKCells775.9
CD71+_EarlyErythroid5.55
CD8+_Tcells1058.9
CardiacMyocytes8.85
Caudatenucleus5.15
Cerebellum4.8
CerebellumPeduncles6.85
CiliaryGanglion5.25
CingulateCortex6.05
Colorectaladenocarcinoma5.75
DorsalRootGanglion5.25
FetalThyroid5.8
Fetalbrain5.45
Fetalliver5.05
Fetallung4.9
GlobusPallidus4.55
Heart8.55
Hypothalamus6.15
Kidney5.05
Leukemia_chronicMyelogenousK-562321.1
Leukemia_promyelocytic-HL-605.2
Leukemialymphoblastic(MOLT-4)64.4
Liver8.45
Lung6.45
Lymphnode94.15
Lymphoma_burkitts(Daudi)7.95
Lymphoma_burkitts(Raji)8.95
MedullaOblongata5.35
OccipitalLobe5.2
OlfactoryBulb4.55
Ovary4.25
Pancreas4.85
PancreaticIslet6.35
ParietalLobe6.4
Pituitary6.7
Placenta5.75
Pons5.75
PrefrontalCortex6.95
Prostate6.9
Salivarygland9
SkeletalMuscle8.1
Skin5.6
SmoothMuscle6.65
Spinalcord6.1
SubthalamicNucleus5.85
SuperiorCervicalGanglion9.1
TemporalLobe5.45
Testis4.9
TestisGermCell4.6
TestisIntersitial4.95
TestisLeydigCell6
TestisSeminiferousTubule5.05
Thalamus6.1
Thymus4.65
Thyroid7.35
Tongue6.25
Tonsil10.25
Trachea5
TrigeminalGanglion7.45
Uterus4.9
UterusCorpus5.6
WholeBlood32.4
Wholebrain4.8
colon5.95
pineal_day7.08
pineal_night7.12
retina7.05
small_intestine5.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P87879
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.25 ± 0.99
Basal Forebrain1.95 ± 0.39
Basal Part of Pons2.68 ± 0.88
Cerebellar Cortex1.58 ± 0.39
Cerebellar Nuclei3.77 ± 0.79
Claustrum2.7 ± 0.8
Epithalamus3.82 ± 0.85
Frontal Lobe1.87 ± 0.88
Globus Pallidus4.18 ± 0.43
Hypothalamus2.34 ± 1.48
Insula2.19 ± 0.74
Limbic Lobe1.88 ± 0.71
Mesencephalon2.13 ± 0.74
Myelencephalon2.09 ± 0.92
Occipital Lobe2 ± 0.69
Parietal Lobe1.94 ± 0.85
Pontine Tegmentum1.73 ± 0.62
Striatum2.69 ± 0.95
Subthalamus2.1 ± 0.27
Temporal Lobe1.84 ± 0.72
Thalamus1.85 ± 0.66
White Matter4.99 ± 0.92
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cd69CBCerebellum0.96
1.43
Cd69CTXCerebral cortex0.59
0.68
Cd69HIPHippocampal region0.62
0.72
Cd69HPFHippocampal formation0.74
0.88
Cd69HYHypothalamus0.21
0.27
Cd69LSXLateral septal complex0.26
0.21
Cd69MBMidbrain0.82
0.97
Cd69MYMedulla1.3
1.52
Cd69OLFOlfactory bulb0.71
0.86
Cd69PPons0.64
0.88
Cd69PALPallidum0.05
0.07
Cd69RHPRetrohippocampal region0.91
1.03
Cd69sAMYStriatum-like amygdalar nuclei0.32
0.39
Cd69STRStriatum0.28
0.29
Cd69STRdStriatum dorsal region0.29
0.28
Cd69STRvStriatum ventral region0.23
0.34
Cd69THThalamus0.55
0.69
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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