Annotation Detail for PPP6R2
Basic Information Top
Gene Symbol: | PPP6R2 ( KIAA0685,PP6R2,SAP190,SAPS2,dJ579N16.1 ) |
---|---|
Gene Full Name: | protein phosphatase 6, regulatory subunit 2 |
Band: | 22q13.33 |
Quick Links | Entrez ID:9701; OMIM: 610877; Uniprot ID:PP6R2_HUMAN; ENSEMBL ID: ENSG00000100239; HGNC ID: 19253 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.449098
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 7 / 70761 | 98 | |
blastocyst | 8 / 62319 | 128 | |
fetus | 21 / 564012 | 37 | |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 0 / 55556 | 0 | |
adult | 163 / 1939121 | 84 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 1 / 12794 | 78 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 8 / 94178 | 84 | |
cervical tumor | 2 / 34366 | 58 | |
chondrosarcoma | 19 / 82823 | 229 | |
colorectal tumor | 14 / 114246 | 122 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 13 / 119369 | 108 | |
germ cell tumor | 9 / 263845 | 34 | |
glioma | 6 / 106883 | 56 | |
head and neck tumor | 8 / 136302 | 58 | |
kidney tumor | 2 / 68959 | 29 | |
leukemia | 8 / 95842 | 83 | |
liver tumor | 9 / 96359 | 93 | |
lung tumor | 10 / 103127 | 96 | |
lymphoma | 3 / 71755 | 41 | |
non-neoplasia | 8 / 97250 | 82 | |
normal | 194 / 3360307 | 57 | |
ovarian tumor | 4 / 76682 | 52 | |
pancreatic tumor | 5 / 104616 | 47 | |
primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
prostate cancer | 2 / 102680 | 19 | |
retinoblastoma | 1 / 46356 | 21 | |
skin tumor | 13 / 124949 | 104 | |
soft tissue/muscle tissue tumor | 9 / 125191 | 71 | |
uterine tumor | 2 / 90257 | 22 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 1 / 33197 | 30 | |
ascites | 8 / 40015 | 199 | |
bladder | 0 / 29757 | 0 | |
blood | 9 / 123478 | 72 | |
bone | 7 / 71655 | 97 | |
bone marrow | 0 / 48801 | 0 | |
brain | 46 / 1100989 | 41 | |
cervix | 2 / 48171 | 41 | |
connective tissue | 10 / 149255 | 66 | |
ear | 1 / 16212 | 61 | |
embryonic tissue | 18 / 215722 | 83 | |
esophagus | 0 / 20209 | 0 | |
eye | 14 / 211054 | 66 | |
heart | 2 / 89626 | 22 | |
intestine | 21 / 234472 | 89 | |
kidney | 8 / 211777 | 37 | |
larynx | 0 / 24145 | 0 | |
liver | 13 / 207743 | 62 | |
lung | 35 / 336974 | 103 | |
lymph | 1 / 44270 | 22 | |
lymph node | 10 / 91610 | 109 | |
mammary gland | 9 / 153271 | 58 | |
mouth | 4 / 67052 | 59 | |
muscle | 3 / 107715 | 27 | |
nerve | 0 / 15768 | 0 | |
ovary | 6 / 102051 | 58 | |
pancreas | 15 / 214812 | 69 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 1 / 16585 | 60 | |
placenta | 26 / 280825 | 92 | |
prostate | 13 / 189345 | 68 | |
salivary gland | 3 / 20155 | 148 | |
skin | 13 / 210574 | 61 | |
spleen | 1 / 53952 | 18 | |
stomach | 5 / 96619 | 51 | |
testis | 70 / 330442 | 211 | |
thymus | 5 / 81131 | 61 | |
thyroid | 2 / 47473 | 42 | |
tonsil | 3 / 16999 | 176 | |
trachea | 3 / 52413 | 57 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 10 / 232878 | 42 | |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 202791_s_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 54.6 | |
Adipocyte | 34.95 | |
AdrenalCortex | 43.2 | |
Adrenalgland | 30.35 | |
Amygdala | 35.6 | |
Appendix | 32.25 | |
AtrioventricularNode | 27.55 | |
BDCA4+_DentriticCells | 55.25 | |
Bonemarrow | 36 | |
BronchialEpithelialCells | 34.4 | |
CD105+_Endothelial | 27.55 | |
CD14+_Monocytes | 38.05 | |
CD19+_BCells(neg._sel.) | 39.55 | |
CD33+_Myeloid | 45.45 | |
CD34+ | 45.4 | |
CD4+_Tcells | 62.05 | |
CD56+_NKCells | 40.55 | |
CD71+_EarlyErythroid | 36.35 | |
CD8+_Tcells | 59.9 | |
CardiacMyocytes | 52.55 | |
Caudatenucleus | 32.5 | |
Cerebellum | 31.7 | |
CerebellumPeduncles | 41.4 | |
CiliaryGanglion | 26.5 | |
CingulateCortex | 39 | |
Colorectaladenocarcinoma | 36.4 | |
DorsalRootGanglion | 27.65 | |
FetalThyroid | 48.05 | |
Fetalbrain | 37.65 | |
Fetalliver | 31.5 | |
Fetallung | 28.85 | |
GlobusPallidus | 25.7 | |
Heart | 47.85 | |
Hypothalamus | 35.75 | |
Kidney | 26.9 | |
Leukemia_chronicMyelogenousK-562 | 30.05 | |
Leukemia_promyelocytic-HL-60 | 30.4 | |
Leukemialymphoblastic(MOLT-4) | 31.2 | |
Liver | 50.1 | |
Lung | 56.35 | |
Lymphnode | 29.1 | |
Lymphoma_burkitts(Daudi) | 45.6 | |
Lymphoma_burkitts(Raji) | 51.3 | |
MedullaOblongata | 31 | |
OccipitalLobe | 34.4 | |
OlfactoryBulb | 29.05 | |
Ovary | 27.6 | |
Pancreas | 28.95 | |
PancreaticIslet | 54.6 | |
ParietalLobe | 47.35 | |
Pituitary | 42.15 | |
Placenta | 34.5 | |
Pons | 34.15 | |
PrefrontalCortex | 60.6 | |
Prostate | 50.95 | |
Salivarygland | 29.1 | |
SkeletalMuscle | 45.65 | |
Skin | 27.55 | |
SmoothMuscle | 42.45 | |
Spinalcord | 38.4 | |
SubthalamicNucleus | 32.15 | |
SuperiorCervicalGanglion | 44.5 | |
TemporalLobe | 32.45 | |
Testis | 55.75 | |
TestisGermCell | 38.45 | |
TestisIntersitial | 58.15 | |
TestisLeydigCell | 64.9 | |
TestisSeminiferousTubule | 70.2 | |
Thalamus | 35.55 | |
Thymus | 33.8 | |
Thyroid | 42.8 | |
Tongue | 41.7 | |
Tonsil | 35.85 | |
Trachea | 28.25 | |
TrigeminalGanglion | 50.7 | |
Uterus | 29.3 | |
UterusCorpus | 32.3 | |
WholeBlood | 38.4 | |
Wholebrain | 48.6 | |
colon | 32.95 | |
pineal_day | 47.92 | |
pineal_night | 50.18 | |
retina | 43.225 | |
small_intestine | 33.25 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_23_P95353
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 5.82 ± 0.51 | |
Basal Forebrain | 6.05 ± 0.26 | |
Basal Part of Pons | 6.41 ± 0.43 | |
Cerebellar Cortex | 6.54 ± 0.23 | |
Cerebellar Nuclei | 5.73 ± 0.5 | |
Claustrum | 5.8 ± 0.79 | |
Epithalamus | 5.76 ± 0.36 | |
Frontal Lobe | 6.2 ± 0.42 | |
Globus Pallidus | 5.34 ± 0.2 | |
Hypothalamus | 5.89 ± 0.66 | |
Insula | 6.31 ± 0.24 | |
Limbic Lobe | 6.03 ± 0.42 | |
Mesencephalon | 5.89 ± 0.41 | |
Myelencephalon | 6.07 ± 0.48 | |
Occipital Lobe | 5.76 ± 0.46 | |
Parietal Lobe | 6.1 ± 0.39 | |
Pontine Tegmentum | 5.95 ± 0.57 | |
Striatum | 5.41 ± 0.39 | |
Subthalamus | 6.03 ± 0.41 | |
Temporal Lobe | 6.28 ± 0.45 | |
Thalamus | 6.04 ± 0.57 | |
White Matter | 5.51 ± 0.27 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Saps2 | CB | Cerebellum | 100 | |
100 | ||||
Saps2 | CTX | Cerebral cortex | 100 | |
100 | ||||
Saps2 | HIP | Hippocampal region | 100 | |
100 | ||||
Saps2 | HPF | Hippocampal formation | 100 | |
100 | ||||
Saps2 | HY | Hypothalamus | 100 | |
100 | ||||
Saps2 | LSX | Lateral septal complex | 100 | |
100 | ||||
Saps2 | MB | Midbrain | 69.34 | |
86.77 | ||||
Saps2 | MY | Medulla | 53.29 | |
88.94 | ||||
Saps2 | OLF | Olfactory bulb | 100 | |
100 | ||||
Saps2 | P | Pons | 55.59 | |
89.2 | ||||
Saps2 | PAL | Pallidum | 100 | |
100 | ||||
Saps2 | RHP | Retrohippocampal region | 100 | |
100 | ||||
Saps2 | sAMY | Striatum-like amygdalar nuclei | 100 | |
100 | ||||
Saps2 | STR | Striatum | 100 | |
100 | ||||
Saps2 | STRd | Striatum dorsal region | 100 | |
100 | ||||
Saps2 | STRv | Striatum ventral region | 100 | |
100 | ||||
Saps2 | TH | Thalamus | 100 | |
100 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00001375 | 16 | 742 | 757 | CSSPVDTECSHAEGSR | Peptide Atlas |