Annotation Detail for CD72
Basic Information Top
| Gene Symbol: | CD72 ( CD72b,LYB2 ) |
|---|---|
| Gene Full Name: | CD72 molecule |
| Band: | 9p13.3 |
| Quick Links | Entrez ID:971; OMIM: 107272; Uniprot ID:CD72_HUMAN; ENSEMBL ID: ENSG00000137101; HGNC ID: 1696 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.116481
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 1 / 564012 | 1 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 24 / 1939121 | 12 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 12 / 263845 | 45 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 6 / 95842 | 62 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 9 / 71755 | 125 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 51 / 3360307 | 15 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 10 / 124949 | 80 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 2 / 1100989 | 1 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 1 / 89626 | 11 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 2 / 336974 | 5 | |
| lymph | 7 / 44270 | 158 | |
| lymph node | 10 / 91610 | 109 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 10 / 210574 | 47 | |
| spleen | 14 / 53952 | 259 |  |
| stomach | 2 / 96619 | 20 | |
| testis | 1 / 330442 | 3 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 6 / 16999 | 352 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 215925_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 9.25 | |
| Adipocyte | 9.25 | |
| AdrenalCortex | 11.45 | |
| Adrenalgland | 7.45 | |
| Amygdala | 7.9 | |
| Appendix | 10.25 | |
| AtrioventricularNode | 10.55 | |
| BDCA4+_DentriticCells | 17.7 | |
| Bonemarrow | 23.4 | |
| BronchialEpithelialCells | 8.1 | |
| CD105+_Endothelial | 8.95 | |
| CD14+_Monocytes | 8.6 | |
| CD19+_BCells(neg._sel.) | 561.8 | |
| CD33+_Myeloid | 9.05 | |
| CD34+ | 9.6 | |
| CD4+_Tcells | 8.55 | |
| CD56+_NKCells | 13.1 | |
| CD71+_EarlyErythroid | 7.6 | |
| CD8+_Tcells | 8.8 | |
| CardiacMyocytes | 14.2 | |
| Caudatenucleus | 10.2 | |
| Cerebellum | 7.1 | |
| CerebellumPeduncles | 10.6 | |
| CiliaryGanglion | 8.05 | |
| CingulateCortex | 22.2 | |
| Colorectaladenocarcinoma | 8.45 | |
| DorsalRootGanglion | 9.15 | |
| FetalThyroid | 8.65 | |
| Fetalbrain | 8.45 | |
| Fetalliver | 10.8 | |
| Fetallung | 7.1 | |
| GlobusPallidus | 8.7 | |
| Heart | 43.3 | |
| Hypothalamus | 8.5 | |
| Kidney | 13.85 | |
| Leukemia_chronicMyelogenousK-562 | 7.35 | |
| Leukemia_promyelocytic-HL-60 | 55.6 | |
| Leukemialymphoblastic(MOLT-4) | 6.3 | |
| Liver | 13.5 | |
| Lung | 9.75 | |
| Lymphnode | 43.4 | |
| Lymphoma_burkitts(Daudi) | 27.05 | |
| Lymphoma_burkitts(Raji) | 549.65 | |
| MedullaOblongata | 9.45 | |
| OccipitalLobe | 10.7 | |
| OlfactoryBulb | 7 | |
| Ovary | 6.05 | |
| Pancreas | 6.95 | |
| PancreaticIslet | 9.9 | |
| ParietalLobe | 9.65 | |
| Pituitary | 11.15 | |
| Placenta | 9.3 | |
| Pons | 8.6 | |
| PrefrontalCortex | 9.9 | |
| Prostate | 9.6 | |
| Salivarygland | 6.95 | |
| SkeletalMuscle | 13.95 | |
| Skin | 9.5 | |
| SmoothMuscle | 9 | |
| Spinalcord | 8.75 | |
| SubthalamicNucleus | 8.15 | |
| SuperiorCervicalGanglion | 14.7 | |
| TemporalLobe | 7.8 | |
| Testis | 7.05 | |
| TestisGermCell | 5.95 | |
| TestisIntersitial | 7.15 | |
| TestisLeydigCell | 8.85 | |
| TestisSeminiferousTubule | 7 | |
| Thalamus | 8.8 | |
| Thymus | 14.85 | |
| Thyroid | 9.35 | |
| Tongue | 9.05 | |
| Tonsil | 81.3 | |
| Trachea | 8.4 | |
| TrigeminalGanglion | 10.55 | |
| Uterus | 6.15 | |
| UterusCorpus | 10.15 | |
| WholeBlood | 15.05 | |
| Wholebrain | 6.6 | |
| colon | 8.05 | |
| pineal_day | 9.78 | |
| pineal_night | 9.38 | |
| retina | 10.25 | |
| small_intestine | 7.5 | |
- Probe name: CUST_6785_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.09 ± 1.01 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.73 ± 0.27 | |
| Basal Part of Pons | 1.58 ± 0.77 | |
| Cerebellar Cortex | 1.58 ± 0.74 | |
| Cerebellar Nuclei | 1.83 ± 0.71 | |
| Claustrum | 2.37 ± 0.82 | |
| Epithalamus | 1.91 ± 0.64 | |
| Frontal Lobe | 1.62 ± 0.69 | |
| Globus Pallidus | 2.33 ± 0.54 | |
| Hypothalamus | 1.6 ± 0.59 | |
| Insula | 1.4 ± 0.57 | |
| Limbic Lobe | 1.63 ± 0.66 | |
| Mesencephalon | 1.77 ± 0.78 | |
| Myelencephalon | 1.68 ± 0.66 | |
| Occipital Lobe | 1.37 ± 0.67 | |
| Parietal Lobe | 1.65 ± 0.8 | |
| Pontine Tegmentum | 1.68 ± 0.62 | |
| Striatum | 1.79 ± 0.63 | |
| Subthalamus | 2 ± 1 | |
| Temporal Lobe | 1.56 ± 0.72 | |
| Thalamus | 1.63 ± 0.66 | |
| White Matter | 2.64 ± 0.91 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cd72 | CB | Cerebellum | 4.9 | |
| 5.65 | | |||
| Cd72 | CTX | Cerebral cortex | 21.67 | |
| 14.73 | | |||
| Cd72 | HIP | Hippocampal region | 5.63 | |
| 4.92 | | |||
| Cd72 | HPF | Hippocampal formation | 5.65 | |
| 4.51 | | |||
| Cd72 | HY | Hypothalamus | 1.98 | |
| 1.39 | | |||
| Cd72 | LSX | Lateral septal complex | 6.57 | |
| 4.18 | | |||
| Cd72 | MB | Midbrain | 2.69 | |
| 3.81 | | |||
| Cd72 | MY | Medulla | 5.05 | |
| 8.19 | | |||
| Cd72 | OLF | Olfactory bulb | 12.86 | |
| 9.67 | | |||
| Cd72 | P | Pons | 5.32 | |
| 8.33 | | |||
| Cd72 | PAL | Pallidum | 3.16 | |
| 2.95 | | |||
| Cd72 | RHP | Retrohippocampal region | 5.68 | |
| 3.87 | | |||
| Cd72 | sAMY | Striatum-like amygdalar nuclei | 4.1 | |
| 2.67 | | |||
| Cd72 | STR | Striatum | 5.87 | |
| 3.64 | | |||
| Cd72 | STRd | Striatum dorsal region | 6.47 | |
| 3.99 | | |||
| Cd72 | STRv | Striatum ventral region | 5.31 | |
| 3.24 | | |||
| Cd72 | TH | Thalamus | 9.14 | |
| 8.67 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CD72_HUMAN_163 | 14 | 163 | 176 | ELAQSQEALQVEQR | PRIDE |
| PAp00039392 | 16 | 177 | 192 | AHQAAEGQLQACQADR | Peptide Atlas |