AutismKB 2.0

Annotation Detail for RAB11FIP3


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Basic Information Top
Gene Symbol:RAB11FIP3 ( KIAA0665,Rab11-FIP3 )
Gene Full Name: RAB11 family interacting protein 3 (class II)
Band: 16p13.3
Quick LinksEntrez ID:9727; OMIM: 608738; Uniprot ID:RFIP3_HUMAN; ENSEMBL ID: ENSG00000090565; HGNC ID: 17224
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst3 / 6231948
fetus20 / 56401235
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult86 / 193912144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma11 / 82823132
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor5 / 26384518
glioma12 / 106883112
head and neck tumor9 / 13630266
kidney tumor5 / 6895972
leukemia0 / 958420 
liver tumor3 / 9635931
lung tumor10 / 10312796
lymphoma3 / 7175541
non-neoplasia2 / 9725020
normal152 / 336030745
ovarian tumor1 / 7668213
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer4 / 10268038
retinoblastoma3 / 4635664
skin tumor10 / 12494980
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder2 / 2975767
blood5 / 12347840
bone8 / 71655111
bone marrow1 / 4880120
brain43 / 110098939
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue11 / 21572250
esophagus0 / 202090 
eye16 / 21105475
heart1 / 8962611
intestine15 / 23447263
kidney39 / 211777184
larynx1 / 2414541
liver4 / 20774319
lung18 / 33697453
lymph1 / 4427022
lymph node5 / 9161054
mammary gland4 / 15327126
mouth1 / 6705214
muscle6 / 10771555
nerve0 / 157680 
ovary2 / 10205119
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta4 / 28082514
prostate7 / 18934536
salivary gland5 / 20155248
skin11 / 21057452
spleen2 / 5395237
stomach0 / 966190 
testis9 / 33044227
thymus1 / 8113112
thyroid3 / 4747363
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203933_at
Cell line Expression level Expression bar
721_B_lymphoblasts12.7
Adipocyte9.25
AdrenalCortex10.9
Adrenalgland8.8
Amygdala31.6
Appendix12.75
AtrioventricularNode7.3
BDCA4+_DentriticCells9.4
Bonemarrow10.1
BronchialEpithelialCells8.8
CD105+_Endothelial10.15
CD14+_Monocytes8.05
CD19+_BCells(neg._sel.)9.95
CD33+_Myeloid11
CD34+11.25
CD4+_Tcells17.6
CD56+_NKCells10.8
CD71+_EarlyErythroid10.3
CD8+_Tcells12.8
CardiacMyocytes22.05
Caudatenucleus9.4
Cerebellum10.15
CerebellumPeduncles11.65
CiliaryGanglion8
CingulateCortex12.2
Colorectaladenocarcinoma12.5
DorsalRootGanglion8.3
FetalThyroid10.4
Fetalbrain10.65
Fetalliver8.65
Fetallung7.1
GlobusPallidus9.1
Heart12.85
Hypothalamus11.65
Kidney26.1
Leukemia_chronicMyelogenousK-5629.5
Leukemia_promyelocytic-HL-609.2
Leukemialymphoblastic(MOLT-4)10.55
Liver13.6
Lung11.4
Lymphnode10
Lymphoma_burkitts(Daudi)14
Lymphoma_burkitts(Raji)24.25
MedullaOblongata11.25
OccipitalLobe9.5
OlfactoryBulb8.15
Ovary6.8
Pancreas8.25
PancreaticIslet10.95
ParietalLobe10.85
Pituitary11.5
Placenta8.85
Pons11.65
PrefrontalCortex14.45
Prostate12.85
Salivarygland9.9
SkeletalMuscle12.9
Skin9.1
SmoothMuscle10.55
Spinalcord10.55
SubthalamicNucleus9.55
SuperiorCervicalGanglion17.55
TemporalLobe10.1
Testis8.9
TestisGermCell8.9
TestisIntersitial8.3
TestisLeydigCell10.25
TestisSeminiferousTubule8.5
Thalamus9.95
Thymus8.1
Thyroid13.2
Tongue10.65
Tonsil10.05
Trachea8.5
TrigeminalGanglion11.75
Uterus9.15
UterusCorpus16.6
WholeBlood7.35
Wholebrain13.7
colon19.05
pineal_day40.92
pineal_night42.68
retina18.25
small_intestine10.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P106727
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.05 ± 0.41
Basal Forebrain8.94 ± 0.27
Basal Part of Pons9.1 ± 0.2
Cerebellar Cortex9.14 ± 0.37
Cerebellar Nuclei8.92 ± 0.51
Claustrum9.03 ± 0.46
Epithalamus8.63 ± 0.35
Frontal Lobe9.14 ± 0.43
Globus Pallidus8.39 ± 0.28
Hypothalamus8.63 ± 0.47
Insula9.3 ± 0.22
Limbic Lobe9.25 ± 0.36
Mesencephalon8.93 ± 0.37
Myelencephalon9.07 ± 0.41
Occipital Lobe9.32 ± 0.25
Parietal Lobe9.2 ± 0.35
Pontine Tegmentum9.08 ± 0.29
Striatum8.86 ± 0.31
Subthalamus8.99 ± 0.32
Temporal Lobe9.21 ± 0.37
Thalamus8.99 ± 0.29
White Matter8.19 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rab11fip3CBCerebellum85.93
100
Rab11fip3CTXCerebral cortex100
100
Rab11fip3HIPHippocampal region100
100
Rab11fip3HPFHippocampal formation100
100
Rab11fip3HYHypothalamus100
100
Rab11fip3LSXLateral septal complex100
100
Rab11fip3MBMidbrain100
100
Rab11fip3MYMedulla100
100
Rab11fip3OLFOlfactory bulb100
100
Rab11fip3PPons100
100
Rab11fip3PALPallidum100
100
Rab11fip3RHPRetrohippocampal region100
100
Rab11fip3sAMYStriatum-like amygdalar nuclei100
100
Rab11fip3STRStriatum100
100
Rab11fip3STRdStriatum dorsal region100
100
Rab11fip3STRvStriatum ventral region100
100
Rab11fip3THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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