AutismKB 2.0

Annotation Detail for CD79A


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Basic Information Top
Gene Symbol:CD79A ( IGA,MB-1 )
Gene Full Name: CD79a molecule, immunoglobulin-associated alpha
Band: 19q13.2
Quick LinksEntrez ID:973; OMIM: 112205; Uniprot ID:CD79A_HUMAN; ENSEMBL ID: ENSG00000105369; HGNC ID: 1698
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus13 / 56401223
neonate0 / 310970 
infant0 / 236200 
juvenile7 / 55556125
adult36 / 193912118
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia4 / 9584241
liver tumor1 / 9635910
lung tumor2 / 10312719
lymphoma81 / 717551128
non-neoplasia1 / 9725010
normal152 / 336030745
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood10 / 12347880
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart2 / 8962622
intestine2 / 2344728
kidney0 / 2117770 
larynx0 / 241450 
liver1 / 2077434
lung5 / 33697414
lymph66 / 442701490
lymph node36 / 91610392
mammary gland5 / 15327132
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate2 / 18934510
salivary gland0 / 201550 
skin0 / 2105740 
spleen15 / 53952278
stomach0 / 966190 
testis0 / 3304420 
thymus8 / 8113198
thyroid0 / 474730 
tonsil58 / 169993411
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205049_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts698.45
Adipocyte8.95
AdrenalCortex13.45
Adrenalgland10.55
Amygdala8.85
Appendix12.45
AtrioventricularNode12.6
BDCA4+_DentriticCells345.5
Bonemarrow104.1
BronchialEpithelialCells6.85
CD105+_Endothelial14.05
CD14+_Monocytes9.1
CD19+_BCells(neg._sel.)3383.1
CD33+_Myeloid10.5
CD34+74.75
CD4+_Tcells16.45
CD56+_NKCells71.25
CD71+_EarlyErythroid16.25
CD8+_Tcells13.4
CardiacMyocytes11.15
Caudatenucleus8.8
Cerebellum7.8
CerebellumPeduncles11.85
CiliaryGanglion5.6
CingulateCortex17.85
Colorectaladenocarcinoma8.4
DorsalRootGanglion8.35
FetalThyroid17.25
Fetalbrain7.95
Fetalliver8.25
Fetallung7.85
GlobusPallidus6.25
Heart127.6
Hypothalamus10.2
Kidney12.1
Leukemia_chronicMyelogenousK-5628
Leukemia_promyelocytic-HL-60437.1
Leukemialymphoblastic(MOLT-4)7.35
Liver15.45
Lung10.05
Lymphnode415
Lymphoma_burkitts(Daudi)1444.55
Lymphoma_burkitts(Raji)3281.85
MedullaOblongata11.15
OccipitalLobe10.5
OlfactoryBulb7.1
Ovary5.95
Pancreas18.95
PancreaticIslet11.65
ParietalLobe9.85
Pituitary13.55
Placenta10.85
Pons12.4
PrefrontalCortex9.3
Prostate9.9
Salivarygland36.2
SkeletalMuscle35.6
Skin6.2
SmoothMuscle9.5
Spinalcord14.4
SubthalamicNucleus19.15
SuperiorCervicalGanglion33.85
TemporalLobe14.6
Testis8.35
TestisGermCell7.95
TestisIntersitial8.4
TestisLeydigCell11.8
TestisSeminiferousTubule10.55
Thalamus11.15
Thymus141.45
Thyroid16.3
Tongue8
Tonsil913.7
Trachea81.85
TrigeminalGanglion7.85
Uterus6.3
UterusCorpus19.55
WholeBlood59.25
Wholebrain6.7
colon17.5
pineal_day10.72
pineal_night11.8
retina12.1
small_intestine18.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15261_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.05 ± 1.16
Basal Forebrain1.74 ± 0.55
Basal Part of Pons1.49 ± 0.6
Cerebellar Cortex1.63 ± 0.95
Cerebellar Nuclei1.82 ± 0.69
Claustrum2.45 ± 0.96
Epithalamus1.57 ± 0.69
Frontal Lobe1.61 ± 0.79
Globus Pallidus2.27 ± 0.57
Hypothalamus1.69 ± 0.76
Insula1.69 ± 0.71
Limbic Lobe1.73 ± 0.78
Mesencephalon1.9 ± 0.78
Myelencephalon1.75 ± 0.75
Occipital Lobe1.74 ± 0.6
Parietal Lobe1.79 ± 0.9
Pontine Tegmentum1.84 ± 0.86
Striatum1.87 ± 0.75
Subthalamus1.72 ± 0.78
Temporal Lobe1.64 ± 0.85
Thalamus1.7 ± 0.66
White Matter1.94 ± 0.13
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cd79aCBCerebellum18.15
22.24
Cd79aCTXCerebral cortex5.64
3.93
Cd79aHIPHippocampal region4.42
4.01
Cd79aHPFHippocampal formation4.88
4.12
Cd79aHYHypothalamus6.07
5.27
Cd79aLSXLateral septal complex5.07
3.98
Cd79aMBMidbrain3.73
3.9
Cd79aMYMedulla3.86
4.85
Cd79aOLFOlfactory bulb21.89
19.31
Cd79aPPons5.15
6.71
Cd79aPALPallidum2.61
2.58
Cd79aRHPRetrohippocampal region5.73
4.26
Cd79asAMYStriatum-like amygdalar nuclei3.49
2.53
Cd79aSTRStriatum3.17
2.42
Cd79aSTRdStriatum dorsal region2.21
1.72
Cd79aSTRvStriatum ventral region5.03
3.45
Cd79aTHThalamus2.69
2.25
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CD79A_HUMAN_124 17 124 140 VRQPPPRPFLDMGEGTK PRIDE
PAp00008542 17 108 124 VQEGNESYQQSCGTYLR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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