Annotation Detail for VPRBP
Basic Information Top
| Gene Symbol: | VPRBP ( DCAF1,KIAA0800,MGC102804 ) |
|---|---|
| Gene Full Name: | Vpr (HIV-1) binding protein |
| Band: | 3p21.2 |
| Quick Links | Entrez ID:9730; OMIM: NA; Uniprot ID:VPRBP_HUMAN; ENSEMBL ID: ENSG00000145041; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.716623
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 11 / 564012 | 19 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 85 / 1939121 | 43 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 8 / 114246 | 70 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 12 / 263845 | 45 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 82 / 3360307 | 24 | |
| ovarian tumor | 7 / 76682 | 91 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 7 / 102680 | 68 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 7 / 124949 | 56 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 4 / 123478 | 32 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 6 / 89626 | 66 | |
| intestine | 16 / 234472 | 68 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 8 / 210574 | 37 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 29 / 330442 | 87 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P212595
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.94 ± 1.08 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.49 ± 0.36 | |
| Basal Part of Pons | 1.27 ± 0.33 | |
| Cerebellar Cortex | 1.98 ± 0.55 | |
| Cerebellar Nuclei | 1.87 ± 0.73 | |
| Claustrum | 2.35 ± 0.83 | |
| Epithalamus | 1.52 ± 0.76 | |
| Frontal Lobe | 1.49 ± 0.73 | |
| Globus Pallidus | 1.67 ± 0.63 | |
| Hypothalamus | 1.61 ± 0.91 | |
| Insula | 1.16 ± 0.73 | |
| Limbic Lobe | 1.52 ± 0.65 | |
| Mesencephalon | 1.73 ± 0.74 | |
| Myelencephalon | 1.62 ± 0.73 | |
| Occipital Lobe | 1.83 ± 0.76 | |
| Parietal Lobe | 1.73 ± 0.71 | |
| Pontine Tegmentum | 1.71 ± 0.78 | |
| Striatum | 1.24 ± 0.67 | |
| Subthalamus | 1.83 ± 0.88 | |
| Temporal Lobe | 1.55 ± 0.69 | |
| Thalamus | 1.64 ± 0.64 | |
| White Matter | 1.61 ± 0.43 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| B930007L02Rik | CB | Cerebellum | 22.12 | |
| 24.92 | | |||
| B930007L02Rik | CTX | Cerebral cortex | 89.02 | |
| 67.17 | | |||
| B930007L02Rik | HIP | Hippocampal region | 63.6 | |
| 93.31 | | |||
| B930007L02Rik | HPF | Hippocampal formation | 65.7 | |
| 77.72 | | |||
| B930007L02Rik | HY | Hypothalamus | 30.57 | |
| 26.25 | | |||
| B930007L02Rik | LSX | Lateral septal complex | 18.99 | |
| 12.5 | | |||
| B930007L02Rik | MB | Midbrain | 28.51 | |
| 26.86 | | |||
| B930007L02Rik | MY | Medulla | 22.67 | |
| 25.49 | | |||
| B930007L02Rik | OLF | Olfactory bulb | 75.23 | |
| 62.42 | | |||
| B930007L02Rik | P | Pons | 23.98 | |
| 27.44 | | |||
| B930007L02Rik | PAL | Pallidum | 39.88 | |
| 36.34 | | |||
| B930007L02Rik | RHP | Retrohippocampal region | 68.24 | |
| 55.95 | | |||
| B930007L02Rik | sAMY | Striatum-like amygdalar nuclei | 59.55 | |
| 43.52 | | |||
| B930007L02Rik | STR | Striatum | 64.8 | |
| 46.92 | | |||
| B930007L02Rik | STRd | Striatum dorsal region | 67.09 | |
| 48.29 | | |||
| B930007L02Rik | STRv | Striatum ventral region | 78.8 | |
| 57.24 | | |||
| B930007L02Rik | TH | Thalamus | 43.35 | |
| 38.99 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00028064 | 15 | 1284 | 1298 | TFHLLHTVPALDQCR | Peptide Atlas |