AutismKB 2.0

Annotation Detail for HDAC9


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Basic Information Top
Gene Symbol:HDAC9 ( DKFZp779K1053,HD7,HD7b,HD9,HDAC,HDAC7,HDAC7B,HDAC9B,HDAC9FL,HDRP,KIAA0744,MITR )
Gene Full Name: histone deacetylase 9
Band: 7p21.1
Quick LinksEntrez ID:9734; OMIM: 606543; Uniprot ID:HDAC9_HUMAN; ENSEMBL ID: ENSG00000048052; HGNC ID: 14065
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus27 / 56401247
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult39 / 193912120
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor18 / 26384568
glioma0 / 1068830 
head and neck tumor5 / 13630236
kidney tumor3 / 6895943
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal93 / 336030727
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor13 / 125191103
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow3 / 4880161
brain40 / 110098936
cervix0 / 481710 
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye5 / 21105423
heart1 / 8962611
intestine3 / 23447212
kidney3 / 21177714
larynx1 / 2414541
liver1 / 2077434
lung3 / 3369748
lymph0 / 442700 
lymph node13 / 91610141
mammary gland2 / 15327113
mouth5 / 6705274
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland2 / 16585120
placenta1 / 2808253
prostate1 / 1893455
salivary gland0 / 201550 
skin5 / 21057423
spleen4 / 5395274
stomach1 / 9661910
testis17 / 33044251
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus12 / 23287851
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205659_at
Cell line Expression level Expression bar
721_B_lymphoblasts46.5
Adipocyte9.5
AdrenalCortex18.6
Adrenalgland10.25
Amygdala17.35
Appendix36.55
AtrioventricularNode16.7
BDCA4+_DentriticCells37.8
Bonemarrow13.85
BronchialEpithelialCells10.75
CD105+_Endothelial11.1
CD14+_Monocytes16.7
CD19+_BCells(neg._sel.)121.65
CD33+_Myeloid56.3
CD34+15.9
CD4+_Tcells8.3
CD56+_NKCells10.55
CD71+_EarlyErythroid11
CD8+_Tcells8.1
CardiacMyocytes14
Caudatenucleus9.2
Cerebellum11.55
CerebellumPeduncles15.2
CiliaryGanglion20.4
CingulateCortex17.25
Colorectaladenocarcinoma9.85
DorsalRootGanglion13.5
FetalThyroid12.05
Fetalbrain39.3
Fetalliver9.35
Fetallung6.95
GlobusPallidus9.65
Heart26.15
Hypothalamus17.6
Kidney11.3
Leukemia_chronicMyelogenousK-56219.95
Leukemia_promyelocytic-HL-6010.6
Leukemialymphoblastic(MOLT-4)6.9
Liver17.75
Lung10.7
Lymphnode14.7
Lymphoma_burkitts(Daudi)16.05
Lymphoma_burkitts(Raji)21.95
MedullaOblongata34.6
OccipitalLobe13.8
OlfactoryBulb12
Ovary9.8
Pancreas9.85
PancreaticIslet18
ParietalLobe15.6
Pituitary17.9
Placenta9.4
Pons11.7
PrefrontalCortex19.4
Prostate13.3
Salivarygland10.9
SkeletalMuscle23
Skin14.05
SmoothMuscle9.9
Spinalcord12.3
SubthalamicNucleus13.45
SuperiorCervicalGanglion53.5
TemporalLobe16
Testis9.05
TestisGermCell12.35
TestisIntersitial10.3
TestisLeydigCell12.55
TestisSeminiferousTubule10.55
Thalamus26.4
Thymus7
Thyroid11.75
Tongue13.9
Tonsil18.6
Trachea8.45
TrigeminalGanglion30.55
Uterus19.25
UterusCorpus14.95
WholeBlood24.35
Wholebrain12.15
colon10
pineal_day53.02
pineal_night28.7
retina14.375
small_intestine9.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8167_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.38 ± 0.72
Basal Forebrain5.34 ± 0.34
Basal Part of Pons5.23 ± 0.43
Cerebellar Cortex5.66 ± 0.33
Cerebellar Nuclei5.57 ± 0.59
Claustrum5.56 ± 0.85
Epithalamus5.16 ± 0.4
Frontal Lobe5.57 ± 0.5
Globus Pallidus5.55 ± 0.49
Hypothalamus5.38 ± 0.35
Insula5.52 ± 0.33
Limbic Lobe5.45 ± 0.61
Mesencephalon5.64 ± 0.54
Myelencephalon5.45 ± 0.6
Occipital Lobe5.7 ± 0.66
Parietal Lobe5.57 ± 0.57
Pontine Tegmentum5.55 ± 0.64
Striatum4.54 ± 0.6
Subthalamus4.38 ± 0.36
Temporal Lobe5.5 ± 0.5
Thalamus5.92 ± 0.49
White Matter5.85 ± 0.46
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Hdac9CBCerebellum5.08
5.82
Hdac9CTXCerebral cortex17.88
13.41
Hdac9HIPHippocampal region11.41
11.54
Hdac9HPFHippocampal formation13.26
12.08
Hdac9HYHypothalamus2.03
1.65
Hdac9LSXLateral septal complex1.58
1.3
Hdac9MBMidbrain3.64
3.39
Hdac9MYMedulla11.16
11.15
Hdac9OLFOlfactory bulb33.28
27.96
Hdac9PPons4.77
4.58
Hdac9PALPallidum4.02
4.23
Hdac9RHPRetrohippocampal region16.89
13.23
Hdac9sAMYStriatum-like amygdalar nuclei7.13
5.14
Hdac9STRStriatum3.03
2.36
Hdac9STRdStriatum dorsal region2.22
1.89
Hdac9STRvStriatum ventral region4.37
2.87
Hdac9THThalamus22.35
18.62
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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