Annotation Detail for CD97
Basic Information Top
| Gene Symbol: | CD97 ( TM7LN1 ) |
|---|---|
| Gene Full Name: | CD97 molecule |
| Band: | 19p13 |
| Quick Links | Entrez ID:976; OMIM: 601211; Uniprot ID:CD97_HUMAN; ENSEMBL ID: ENSG00000123146; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.466039
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 10 / 564012 | 17 | |
| neonate | 11 / 31097 | 353 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 168 / 1939121 | 86 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 13 / 34366 | 378 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 19 / 114246 | 166 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 12 / 263845 | 45 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 10 / 136302 | 73 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 32 / 95842 | 333 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 48 / 97250 | 493 | |
| normal | 409 / 3360307 | 121 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 10 / 90257 | 110 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 102 / 123478 | 826 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 57 / 1100989 | 51 | |
| cervix | 13 / 48171 | 269 | |
| connective tissue | 49 / 149255 | 328 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 2 / 89626 | 22 | |
| intestine | 37 / 234472 | 157 | |
| kidney | 33 / 211777 | 155 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 36 / 336974 | 106 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 8 / 67052 | 119 | |
| muscle | 1 / 107715 | 9 |  |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 39 / 280825 | 138 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 14 / 210574 | 66 | |
| spleen | 109 / 53952 | 2020 |  |
| stomach | 24 / 96619 | 248 | |
| testis | 12 / 330442 | 36 | |
| thymus | 158 / 81131 | 1947 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 14 / 52413 | 267 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 68 / 232878 | 291 | |
| vascular | 3 / 51780 | 57 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 202910_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 31 | |
| Adipocyte | 4.9 | |
| AdrenalCortex | 5.35 | |
| Adrenalgland | 4.25 | |
| Amygdala | 4.9 | |
| Appendix | 5 | |
| AtrioventricularNode | 3.65 | |
| BDCA4+_DentriticCells | 101.6 | |
| Bonemarrow | 26.9 | |
| BronchialEpithelialCells | 4.65 | |
| CD105+_Endothelial | 5.85 | |
| CD14+_Monocytes | 430.1 | |
| CD19+_BCells(neg._sel.) | 20.65 | |
| CD33+_Myeloid | 355.2 | |
| CD34+ | 22.1 | |
| CD4+_Tcells | 154.75 | |
| CD56+_NKCells | 673.75 | |
| CD71+_EarlyErythroid | 4.65 | |
| CD8+_Tcells | 207.85 | |
| CardiacMyocytes | 6.05 | |
| Caudatenucleus | 4.45 | |
| Cerebellum | 4 | |
| CerebellumPeduncles | 5.6 | |
| CiliaryGanglion | 3.6 | |
| CingulateCortex | 5.05 | |
| Colorectaladenocarcinoma | 11.15 | |
| DorsalRootGanglion | 3.85 | |
| FetalThyroid | 4.9 | |
| Fetalbrain | 5 | |
| Fetalliver | 4.25 | |
| Fetallung | 10.5 | |
| GlobusPallidus | 3.65 | |
| Heart | 8.7 | |
| Hypothalamus | 5.45 | |
| Kidney | 4.05 | |
| Leukemia_chronicMyelogenousK-562 | 6.75 | |
| Leukemia_promyelocytic-HL-60 | 4.3 | |
| Leukemialymphoblastic(MOLT-4) | 3.9 | |
| Liver | 6.45 | |
| Lung | 97.9 | |
| Lymphnode | 28.15 | |
| Lymphoma_burkitts(Daudi) | 6.4 | |
| Lymphoma_burkitts(Raji) | 7.2 | |
| MedullaOblongata | 4.55 | |
| OccipitalLobe | 4.45 | |
| OlfactoryBulb | 3.95 | |
| Ovary | 3.25 | |
| Pancreas | 4.25 | |
| PancreaticIslet | 5.25 | |
| ParietalLobe | 5.4 | |
| Pituitary | 5.75 | |
| Placenta | 21.15 | |
| Pons | 4.75 | |
| PrefrontalCortex | 5.9 | |
| Prostate | 8.95 | |
| Salivarygland | 4 | |
| SkeletalMuscle | 5.7 | |
| Skin | 3.9 | |
| SmoothMuscle | 5.75 | |
| Spinalcord | 5.5 | |
| SubthalamicNucleus | 4.5 | |
| SuperiorCervicalGanglion | 5.5 | |
| TemporalLobe | 4.45 | |
| Testis | 4.3 | |
| TestisGermCell | 4 | |
| TestisIntersitial | 4.1 | |
| TestisLeydigCell | 4.85 | |
| TestisSeminiferousTubule | 4.2 | |
| Thalamus | 5.05 | |
| Thymus | 21.95 | |
| Thyroid | 6.9 | |
| Tongue | 4.85 | |
| Tonsil | 6.15 | |
| Trachea | 7.3 | |
| TrigeminalGanglion | 4.9 | |
| Uterus | 91 | |
| UterusCorpus | 5.5 | |
| WholeBlood | 434.95 | |
| Wholebrain | 3.95 | |
| colon | 6.2 | |
| pineal_day | 6.18 | |
| pineal_night | 5.96 | |
| retina | 5.85 | |
| small_intestine | 4.9 | |
- Probe name: A_23_P502314
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.03 ± 0.72 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.03 ± 0.42 | |
| Basal Part of Pons | 3.03 ± 0.69 | |
| Cerebellar Cortex | 2.87 ± 0.68 | |
| Cerebellar Nuclei | 3.13 ± 0.65 | |
| Claustrum | 2.91 ± 0.69 | |
| Epithalamus | 3.12 ± 1.04 | |
| Frontal Lobe | 3.07 ± 0.66 | |
| Globus Pallidus | 3.72 ± 0.4 | |
| Hypothalamus | 2.93 ± 0.36 | |
| Insula | 2.78 ± 0.55 | |
| Limbic Lobe | 2.82 ± 0.69 | |
| Mesencephalon | 3.08 ± 0.58 | |
| Myelencephalon | 3.12 ± 0.66 | |
| Occipital Lobe | 3.07 ± 0.63 | |
| Parietal Lobe | 2.98 ± 0.67 | |
| Pontine Tegmentum | 3.04 ± 0.69 | |
| Striatum | 3.3 ± 0.58 | |
| Subthalamus | 3.12 ± 0.18 | |
| Temporal Lobe | 2.91 ± 0.67 | |
| Thalamus | 3.23 ± 0.55 | |
| White Matter | 4.85 ± 0.42 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cd97 | CB | Cerebellum | 60.45 | |
| 50.94 | | |||
| Cd97 | CTX | Cerebral cortex | 32.26 | |
| 20.54 | | |||
| Cd97 | HIP | Hippocampal region | 20.08 | |
| 10.3 | | |||
| Cd97 | HPF | Hippocampal formation | 22.47 | |
| 14.47 | | |||
| Cd97 | HY | Hypothalamus | 22.67 | |
| 12.61 | | |||
| Cd97 | LSX | Lateral septal complex | 20.93 | |
| 10.52 | | |||
| Cd97 | MB | Midbrain | 23.69 | |
| 16.15 | | |||
| Cd97 | MY | Medulla | 61.05 | |
| 53.08 | | |||
| Cd97 | OLF | Olfactory bulb | 54.43 | |
| 29.96 | | |||
| Cd97 | P | Pons | 46.94 | |
| 35.58 | | |||
| Cd97 | PAL | Pallidum | 24.52 | |
| 17.12 | | |||
| Cd97 | RHP | Retrohippocampal region | 27.45 | |
| 18.8 | | |||
| Cd97 | sAMY | Striatum-like amygdalar nuclei | 19.94 | |
| 10.32 | | |||
| Cd97 | STR | Striatum | 16.51 | |
| 8.62 | | |||
| Cd97 | STRd | Striatum dorsal region | 10.06 | |
| 5.51 | | |||
| Cd97 | STRv | Striatum ventral region | 35.28 | |
| 16.48 | | |||
| Cd97 | TH | Thalamus | 20 | |
| 11.41 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CD97_HUMAN_304 | 20 | 304 | 323 | LVDELMEAPGDVEALAPPVR | PRIDE |
| CD97_HUMAN_323 | 16 | 323 | 338 | HLIATQLLSNLEDIMR | PRIDE |
| CD97_HUMAN_324 | 16 | 324 | 339 | HLIATQLLSNLEDIMR | PRIDE |
| CD97_HUMAN_809 | 17 | 809 | 825 | YSEFTSTTSGTGHNQTR | PRIDE |
| PAp00002827 | 15 | 505 | 519 | GGHWATEGCQVLGSK | Peptide Atlas |