AutismKB 2.0

Annotation Detail for ATG13


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Basic Information Top
Gene Symbol:ATG13 ( FLJ20698,KIAA0652 )
Gene Full Name: ATG13 autophagy related 13 homolog (S. cerevisiae)
Band: 11p11.2
Quick LinksEntrez ID:9776; OMIM: NA; Uniprot ID:ATG13_HUMAN; ENSEMBL ID: ENSG00000175224; HGNC ID: 29091
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst13 / 62319208
fetus97 / 564012171
neonate10 / 31097321
infant3 / 23620127
juvenile10 / 55556179
adult269 / 1939121138
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor9 / 9417895
cervical tumor4 / 34366116
chondrosarcoma9 / 82823108
colorectal tumor25 / 114246218
esophageal tumor4 / 17290231
gastrointestinal tumor17 / 119369142
germ cell tumor76 / 263845288
glioma17 / 106883159
head and neck tumor37 / 136302271
kidney tumor8 / 68959116
leukemia12 / 95842125
liver tumor9 / 9635993
lung tumor16 / 103127155
lymphoma14 / 71755195
non-neoplasia18 / 97250185
normal717 / 3360307213
ovarian tumor10 / 76682130
pancreatic tumor13 / 104616124
primitive neuroectodermal tumor of the CNS13 / 125680103
prostate cancer15 / 102680146
retinoblastoma13 / 46356280
skin tumor6 / 12494948
soft tissue/muscle tissue tumor14 / 125191111
uterine tumor11 / 90257121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites5 / 40015124
bladder3 / 29757100
blood12 / 12347897
bone4 / 7165555
bone marrow6 / 48801122
brain457 / 1100989415
cervix9 / 48171186
connective tissue23 / 149255154
ear0 / 162120 
embryonic tissue26 / 215722120
esophagus4 / 20209197
eye33 / 211054156
heart6 / 8962666
intestine40 / 234472170
kidney22 / 211777103
larynx4 / 24145165
liver14 / 20774367
lung40 / 336974118
lymph11 / 44270248
lymph node6 / 9161065
mammary gland16 / 153271104
mouth26 / 67052387
muscle10 / 10771592
nerve0 / 157680 
ovary10 / 10205197
pancreas14 / 21481265
parathyroid2 / 2053997
pharynx2 / 4132848
pituitary gland2 / 16585120
placenta30 / 280825106
prostate26 / 189345137
salivary gland1 / 2015549
skin26 / 210574123
spleen13 / 53952240
stomach15 / 96619155
testis170 / 330442514
thymus40 / 81131493
thyroid7 / 47473147
tonsil1 / 1699958
trachea37 / 52413705
umbilical cord6 / 13680438
uterus51 / 232878218
vascular12 / 51780231
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203363_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts105.9
Adipocyte94.75
AdrenalCortex98.55
Adrenalgland68.8
Amygdala75.1
Appendix78.55
AtrioventricularNode60.15
BDCA4+_DentriticCells85.85
Bonemarrow79.8
BronchialEpithelialCells62.15
CD105+_Endothelial42.75
CD14+_Monocytes65.35
CD19+_BCells(neg._sel.)60.3
CD33+_Myeloid38.5
CD34+82.9
CD4+_Tcells87.45
CD56+_NKCells46.9
CD71+_EarlyErythroid88.35
CD8+_Tcells76.85
CardiacMyocytes112.5
Caudatenucleus58.25
Cerebellum78.45
CerebellumPeduncles82.55
CiliaryGanglion48.9
CingulateCortex78.65
Colorectaladenocarcinoma85.2
DorsalRootGanglion72.05
FetalThyroid75.1
Fetalbrain68.7
Fetalliver64.35
Fetallung44.15
GlobusPallidus53.15
Heart132.5
Hypothalamus78.1
Kidney92.65
Leukemia_chronicMyelogenousK-56271.65
Leukemia_promyelocytic-HL-6058.85
Leukemialymphoblastic(MOLT-4)55.9
Liver95.45
Lung101.65
Lymphnode78.35
Lymphoma_burkitts(Daudi)93.2
Lymphoma_burkitts(Raji)112.55
MedullaOblongata79
OccipitalLobe58.45
OlfactoryBulb42.25
Ovary65.45
Pancreas57.75
PancreaticIslet63.85
ParietalLobe77.1
Pituitary115.55
Placenta76.8
Pons76.6
PrefrontalCortex101.75
Prostate68.95
Salivarygland56.9
SkeletalMuscle97.2
Skin53.85
SmoothMuscle86.1
Spinalcord68.45
SubthalamicNucleus54.2
SuperiorCervicalGanglion122.6
TemporalLobe67.4
Testis182.45
TestisGermCell133.45
TestisIntersitial125.2
TestisLeydigCell114.75
TestisSeminiferousTubule136.15
Thalamus58.55
Thymus73.3
Thyroid100.3
Tongue71.85
Tonsil72.55
Trachea78.5
TrigeminalGanglion87.2
Uterus41.7
UterusCorpus104.75
WholeBlood76.25
Wholebrain76.15
colon71.85
pineal_day82.24
pineal_night70.86
retina114.25
small_intestine67.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P95292
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.17 ± 0.27
Basal Forebrain7.24 ± 0.23
Basal Part of Pons7.51 ± 0.18
Cerebellar Cortex7.05 ± 0.12
Cerebellar Nuclei7.12 ± 0.26
Claustrum7.6 ± 0.26
Epithalamus7.05 ± 0.24
Frontal Lobe7.23 ± 0.22
Globus Pallidus7.19 ± 0.26
Hypothalamus7.16 ± 0.25
Insula7.19 ± 0.21
Limbic Lobe7.25 ± 0.25
Mesencephalon7.19 ± 0.31
Myelencephalon7.23 ± 0.26
Occipital Lobe7.28 ± 0.25
Parietal Lobe7.33 ± 0.28
Pontine Tegmentum7.22 ± 0.23
Striatum7.32 ± 0.26
Subthalamus7.22 ± 0.19
Temporal Lobe7.25 ± 0.2
Thalamus7.29 ± 0.22
White Matter8.02 ± 0.25
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00513552 23 337 359 THCAATPSSSEDTETVSNSSEGR Peptide Atlas
Q53EN6_HUMAN_1 10 1 10 METDLNSQDR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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