AutismKB 2.0

Annotation Detail for MATR3


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Basic Information Top
Gene Symbol:MATR3 ( DKFZp686K0542,DKFZp686K23100,KIAA0723,MGC9105,MPD2,VCPDM )
Gene Full Name: matrin 3
Band: 5q31.2
Quick LinksEntrez ID:9782; OMIM: 164015,606070; Uniprot ID:MATR3_HUMAN; ENSEMBL ID: ENSG00000015479; HGNC ID: 6912
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body41 / 70761579
blastocyst39 / 62319625
fetus244 / 564012432
neonate5 / 31097160
infant7 / 23620296
juvenile19 / 55556341
adult488 / 1939121251
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor5 / 12794390
bladder carcinoma6 / 17475343
breast (mammary gland) tumor20 / 94178212
cervical tumor8 / 34366232
chondrosarcoma6 / 8282372
colorectal tumor18 / 114246157
esophageal tumor5 / 17290289
gastrointestinal tumor34 / 119369284
germ cell tumor92 / 263845348
glioma17 / 106883159
head and neck tumor27 / 136302198
kidney tumor21 / 68959304
leukemia23 / 95842239
liver tumor28 / 96359290
lung tumor13 / 103127126
lymphoma17 / 71755236
non-neoplasia12 / 97250123
normal1197 / 3360307356
ovarian tumor13 / 76682169
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS25 / 125680198
prostate cancer28 / 102680272
retinoblastoma15 / 46356323
skin tumor36 / 124949288
soft tissue/muscle tissue tumor23 / 125191183
uterine tumor19 / 90257210
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland12 / 33197361
ascites19 / 40015474
bladder18 / 29757604
blood25 / 123478202
bone17 / 71655237
bone marrow24 / 48801491
brain645 / 1100989585
cervix12 / 48171249
connective tissue9 / 14925560
ear9 / 16212555
embryonic tissue102 / 215722472
esophagus5 / 20209247
eye48 / 211054227
heart17 / 89626189
intestine41 / 234472174
kidney50 / 211777236
larynx1 / 2414541
liver54 / 207743259
lung45 / 336974133
lymph7 / 44270158
lymph node11 / 91610120
mammary gland42 / 153271274
mouth15 / 67052223
muscle81 / 107715751
nerve3 / 15768190
ovary10 / 10205197
pancreas33 / 214812153
parathyroid3 / 20539146
pharynx12 / 41328290
pituitary gland4 / 16585241
placenta54 / 280825192
prostate44 / 189345232
salivary gland4 / 20155198
skin50 / 210574237
spleen9 / 53952166
stomach15 / 96619155
testis156 / 330442472
thymus28 / 81131345
thyroid15 / 47473315
tonsil1 / 1699958
trachea45 / 52413858
umbilical cord1 / 1368073
uterus75 / 232878322
vascular19 / 51780366
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200626_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts1123.95
Adipocyte187.75
AdrenalCortex67
Adrenalgland37.55
Amygdala1209.25
Appendix86.6
AtrioventricularNode45.25
BDCA4+_DentriticCells555.9
Bonemarrow31.95
BronchialEpithelialCells291.7
CD105+_Endothelial603.7
CD14+_Monocytes300
CD19+_BCells(neg._sel.)667.3
CD33+_Myeloid508.6
CD34+852.55
CD4+_Tcells612.05
CD56+_NKCells839.5
CD71+_EarlyErythroid251.55
CD8+_Tcells585.8
CardiacMyocytes210.2
Caudatenucleus420.2
Cerebellum155.95
CerebellumPeduncles241.85
CiliaryGanglion49
CingulateCortex411.95
Colorectaladenocarcinoma290.95
DorsalRootGanglion59.85
FetalThyroid129.95
Fetalbrain1276.3
Fetalliver290.85
Fetallung313.9
GlobusPallidus292.35
Heart22.25
Hypothalamus761.2
Kidney26.1
Leukemia_chronicMyelogenousK-562516
Leukemia_promyelocytic-HL-60561.7
Leukemialymphoblastic(MOLT-4)452.5
Liver24.1
Lung18.3
Lymphnode350.5
Lymphoma_burkitts(Daudi)550.75
Lymphoma_burkitts(Raji)509.65
MedullaOblongata471.75
OccipitalLobe720.3
OlfactoryBulb180
Ovary152.35
Pancreas131.55
PancreaticIslet303.95
ParietalLobe387.65
Pituitary410.15
Placenta39.85
Pons240.65
PrefrontalCortex1171.4
Prostate140.8
Salivarygland196.7
SkeletalMuscle29.45
Skin46.9
SmoothMuscle304.65
Spinalcord408.5
SubthalamicNucleus315.55
SuperiorCervicalGanglion26.95
TemporalLobe298.1
Testis57.6
TestisGermCell261.05
TestisIntersitial138.2
TestisLeydigCell192.9
TestisSeminiferousTubule145.55
Thalamus476.55
Thymus116.15
Thyroid804.85
Tongue39.5
Tonsil227.75
Trachea176.6
TrigeminalGanglion42.65
Uterus474.8
UterusCorpus79.15
WholeBlood397.5
Wholebrain249.95
colon284.4
pineal_day953.84
pineal_night1054.2
retina246.05
small_intestine155.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P135790
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.81 ± 0.42
Basal Forebrain5.51 ± 0.28
Basal Part of Pons5.27 ± 0.54
Cerebellar Cortex5.06 ± 0.41
Cerebellar Nuclei5.15 ± 0.45
Claustrum5.71 ± 0.64
Epithalamus5.18 ± 0.42
Frontal Lobe5.14 ± 0.49
Globus Pallidus5.47 ± 0.31
Hypothalamus5.13 ± 0.46
Insula5.18 ± 0.53
Limbic Lobe5.69 ± 0.6
Mesencephalon5.38 ± 0.55
Myelencephalon5.4 ± 0.57
Occipital Lobe6.03 ± 0.7
Parietal Lobe5.39 ± 0.45
Pontine Tegmentum5.33 ± 0.59
Striatum6.1 ± 0.45
Subthalamus4.81 ± 0.28
Temporal Lobe5.18 ± 0.46
Thalamus5.25 ± 0.45
White Matter5.3 ± 0.79
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Matr3CBCerebellum100
100
Matr3CTXCerebral cortex100
100
Matr3HIPHippocampal region100
100
Matr3HPFHippocampal formation100
100
Matr3HYHypothalamus100
100
Matr3LSXLateral septal complex100
100
Matr3MBMidbrain100
100
Matr3MYMedulla100
100
Matr3OLFOlfactory bulb100
100
Matr3PPons100
100
Matr3PALPallidum100
100
Matr3RHPRetrohippocampal region100
100
Matr3sAMYStriatum-like amygdalar nuclei100
100
Matr3STRStriatum100
100
Matr3STRdStriatum dorsal region100
100
Matr3STRvStriatum ventral region100
100
Matr3THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
MATR3_HUMAN_120 26 120 145 DLDELSRYPEDKITPENLPQILLQLK PRIDE
MATR3_HUMAN_19 25 19 43 DLSAAGIGLLAAATQSLSMPASLGR PRIDE
MATR3_HUMAN_2 11 2 12 SKSFQQSSLSR PRIDE
MATR3_HUMAN_208 9 208 216 SQESGYYDR PRIDE
MATR3_HUMAN_305 13 305 317 EWSQHINGASHSR PRIDE
MATR3_HUMAN_399 9 399 407 VVHIMDFQR PRIDE
MATR3_HUMAN_412 21 412 432 YQLLQLVEPFGVISNHLILNK PRIDE
MATR3_HUMAN_764 17 764 780 GQSDENKDDYTIPDEYR PRIDE
PAp00001331 16 230 245 CRDDSFFGETSHNYHK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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