AutismKB 2.0

Annotation Detail for ARMCX2


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Basic Information Top
Gene Symbol:ARMCX2 ( ALEX2,KIAA0512,MGC13343,MGC8742 )
Gene Full Name: armadillo repeat containing, X-linked 2
Band: Xq22.1
Quick LinksEntrez ID:9823; OMIM: 300363; Uniprot ID:ARMX2_HUMAN; ENSEMBL ID: ENSG00000184867; HGNC ID: 16869
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body12 / 70761169
blastocyst21 / 62319336
fetus31 / 56401254
neonate1 / 3109732
infant1 / 2362042
juvenile2 / 5555635
adult84 / 193912143
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma8 / 8282396
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor24 / 26384590
glioma5 / 10688346
head and neck tumor10 / 13630273
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor2 / 10312719
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal177 / 336030752
ovarian tumor5 / 7668265
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor6 / 12494948
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone6 / 7165583
bone marrow2 / 4880140
brain52 / 110098947
cervix0 / 481710 
connective tissue8 / 14925553
ear5 / 16212308
embryonic tissue39 / 215722180
esophagus0 / 202090 
eye7 / 21105433
heart3 / 8962633
intestine1 / 2344724
kidney4 / 21177718
larynx1 / 2414541
liver4 / 20774319
lung13 / 33697438
lymph1 / 4427022
lymph node0 / 916100 
mammary gland3 / 15327119
mouth5 / 6705274
muscle6 / 10771555
nerve0 / 157680 
ovary5 / 10205148
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta11 / 28082539
prostate6 / 18934531
salivary gland0 / 201550 
skin11 / 21057452
spleen2 / 5395237
stomach2 / 9661920
testis29 / 33044287
thymus2 / 8113124
thyroid6 / 47473126
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus10 / 23287842
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203404_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.2
Adipocyte5.4
AdrenalCortex29.15
Adrenalgland45.2
Amygdala52.3
Appendix5.2
AtrioventricularNode3.8
BDCA4+_DentriticCells4.05
Bonemarrow4.3
BronchialEpithelialCells7.95
CD105+_Endothelial4.35
CD14+_Monocytes4.35
CD19+_BCells(neg._sel.)5.15
CD33+_Myeloid5.35
CD34+5.55
CD4+_Tcells4.05
CD56+_NKCells5.55
CD71+_EarlyErythroid3.75
CD8+_Tcells4.3
CardiacMyocytes9.2
Caudatenucleus13
Cerebellum4.1
CerebellumPeduncles6.05
CiliaryGanglion3.75
CingulateCortex12.4
Colorectaladenocarcinoma3.85
DorsalRootGanglion4.1
FetalThyroid40.85
Fetalbrain24.6
Fetalliver3.55
Fetallung13.55
GlobusPallidus7
Heart5.65
Hypothalamus27.9
Kidney7.65
Leukemia_chronicMyelogenousK-5623.95
Leukemia_promyelocytic-HL-603.75
Leukemialymphoblastic(MOLT-4)3
Liver5.4
Lung5.45
Lymphnode4.95
Lymphoma_burkitts(Daudi)4.9
Lymphoma_burkitts(Raji)5.3
MedullaOblongata21.65
OccipitalLobe27.55
OlfactoryBulb4.7
Ovary9.25
Pancreas3.5
PancreaticIslet13.35
ParietalLobe9.25
Pituitary108.25
Placenta10.5
Pons14.85
PrefrontalCortex36.15
Prostate13.65
Salivarygland14.4
SkeletalMuscle5.65
Skin3.4
SmoothMuscle89.9
Spinalcord14.25
SubthalamicNucleus17.65
SuperiorCervicalGanglion5.8
TemporalLobe10.25
Testis4.35
TestisGermCell8.15
TestisIntersitial3.8
TestisLeydigCell14.5
TestisSeminiferousTubule3.7
Thalamus15
Thymus3.85
Thyroid113.1
Tongue4.7
Tonsil4.2
Trachea11.8
TrigeminalGanglion4.85
Uterus27.7
UterusCorpus11.95
WholeBlood4.25
Wholebrain34.4
colon4.65
pineal_day72.82
pineal_night68.5
retina40.35
small_intestine6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1055_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.03 ± 0.28
Basal Forebrain7.74 ± 0.25
Basal Part of Pons7.88 ± 0.33
Cerebellar Cortex7.4 ± 0.24
Cerebellar Nuclei7.67 ± 0.26
Claustrum8.34 ± 0.22
Epithalamus7.39 ± 0.3
Frontal Lobe7.76 ± 0.41
Globus Pallidus7.46 ± 0.47
Hypothalamus8.13 ± 0.37
Insula7.81 ± 0.32
Limbic Lobe7.93 ± 0.38
Mesencephalon7.83 ± 0.47
Myelencephalon7.69 ± 0.4
Occipital Lobe7.58 ± 0.37
Parietal Lobe7.78 ± 0.41
Pontine Tegmentum7.68 ± 0.42
Striatum7.49 ± 0.52
Subthalamus7.79 ± 0.21
Temporal Lobe7.85 ± 0.36
Thalamus7.46 ± 0.29
White Matter7.49 ± 0.68
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Armcx2CBCerebellum50.29
70.71
Armcx2LSXLateral septal complex100
100
Armcx2MYMedulla65.35
85.92
Armcx2STRdStriatum dorsal region90.72
76.6
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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