Annotation Detail for ELMO1
Basic Information Top
Gene Symbol: | ELMO1 ( CED-12,CED12,ELMO-1,KIAA0281,MGC126406 ) |
---|---|
Gene Full Name: | engulfment and cell motility 1 |
Band: | 7p14.2-p14.1 |
Quick Links | Entrez ID:9844; OMIM: 606420; Uniprot ID:ELMO1_HUMAN; ENSEMBL ID: ENSG00000155849; HGNC ID: 16286 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.656638
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 1 / 70761 | 14 | |
blastocyst | 1 / 62319 | 16 | |
fetus | 73 / 564012 | 129 | |
neonate | 2 / 31097 | 64 | |
infant | 0 / 23620 | 0 | |
juvenile | 9 / 55556 | 161 | |
adult | 108 / 1939121 | 55 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 1 / 94178 | 10 | |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 0 / 82823 | 0 | |
colorectal tumor | 0 / 114246 | 0 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 0 / 119369 | 0 | |
germ cell tumor | 23 / 263845 | 87 | |
glioma | 3 / 106883 | 28 | |
head and neck tumor | 8 / 136302 | 58 | |
kidney tumor | 19 / 68959 | 275 | |
leukemia | 7 / 95842 | 73 | |
liver tumor | 1 / 96359 | 10 | |
lung tumor | 6 / 103127 | 58 | |
lymphoma | 7 / 71755 | 97 | |
non-neoplasia | 12 / 97250 | 123 | |
normal | 504 / 3360307 | 149 | |
ovarian tumor | 1 / 76682 | 13 | |
pancreatic tumor | 2 / 104616 | 19 | |
primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
prostate cancer | 0 / 102680 | 0 | |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
uterine tumor | 1 / 90257 | 11 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 1 / 13106 | 76 | |
adrenal gland | 0 / 33197 | 0 | |
ascites | 0 / 40015 | 0 | |
bladder | 1 / 29757 | 33 | |
blood | 15 / 123478 | 121 | |
bone | 0 / 71655 | 0 | |
bone marrow | 4 / 48801 | 81 | |
brain | 446 / 1100989 | 405 | |
cervix | 0 / 48171 | 0 | |
connective tissue | 6 / 149255 | 40 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 4 / 215722 | 18 | |
esophagus | 0 / 20209 | 0 | |
eye | 4 / 211054 | 18 | |
heart | 1 / 89626 | 11 | |
intestine | 0 / 234472 | 0 | |
kidney | 20 / 211777 | 94 | |
larynx | 6 / 24145 | 248 | |
liver | 1 / 207743 | 4 | |
lung | 10 / 336974 | 29 | |
lymph | 1 / 44270 | 22 | |
lymph node | 8 / 91610 | 87 | |
mammary gland | 2 / 153271 | 13 | |
mouth | 1 / 67052 | 14 | |
muscle | 5 / 107715 | 46 | |
nerve | 0 / 15768 | 0 | |
ovary | 1 / 102051 | 9 | |
pancreas | 6 / 214812 | 27 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 1 / 41328 | 24 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 28 / 280825 | 99 | |
prostate | 1 / 189345 | 5 | |
salivary gland | 0 / 20155 | 0 | |
skin | 0 / 210574 | 0 | |
spleen | 5 / 53952 | 92 | |
stomach | 0 / 96619 | 0 | |
testis | 16 / 330442 | 48 | |
thymus | 10 / 81131 | 123 | |
thyroid | 13 / 47473 | 273 | |
tonsil | 2 / 16999 | 117 | |
trachea | 8 / 52413 | 152 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 7 / 232878 | 30 | |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 204513_s_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 594 | |
Adipocyte | 11.45 | |
AdrenalCortex | 7.8 | |
Adrenalgland | 17.5 | |
Amygdala | 186.2 | |
Appendix | 28.55 | |
AtrioventricularNode | 10.05 | |
BDCA4+_DentriticCells | 135.15 | |
Bonemarrow | 73.7 | |
BronchialEpithelialCells | 7.95 | |
CD105+_Endothelial | 17.6 | |
CD14+_Monocytes | 108.55 | |
CD19+_BCells(neg._sel.) | 100 | |
CD33+_Myeloid | 133.25 | |
CD34+ | 186.2 | |
CD4+_Tcells | 84.2 | |
CD56+_NKCells | 89.7 | |
CD71+_EarlyErythroid | 7.45 | |
CD8+_Tcells | 49.8 | |
CardiacMyocytes | 12.6 | |
Caudatenucleus | 152.65 | |
Cerebellum | 611.05 | |
CerebellumPeduncles | 238.3 | |
CiliaryGanglion | 8.25 | |
CingulateCortex | 317.55 | |
Colorectaladenocarcinoma | 7.35 | |
DorsalRootGanglion | 12.95 | |
FetalThyroid | 226.8 | |
Fetalbrain | 106.9 | |
Fetalliver | 18.25 | |
Fetallung | 20.8 | |
GlobusPallidus | 109.05 | |
Heart | 30.45 | |
Hypothalamus | 160.75 | |
Kidney | 12.4 | |
Leukemia_chronicMyelogenousK-562 | 7.25 | |
Leukemia_promyelocytic-HL-60 | 56 | |
Leukemialymphoblastic(MOLT-4) | 15.1 | |
Liver | 29.15 | |
Lung | 46.85 | |
Lymphnode | 36.5 | |
Lymphoma_burkitts(Daudi) | 88.25 | |
Lymphoma_burkitts(Raji) | 57.85 | |
MedullaOblongata | 285.6 | |
OccipitalLobe | 281.35 | |
OlfactoryBulb | 123.85 | |
Ovary | 5.65 | |
Pancreas | 6 | |
PancreaticIslet | 93 | |
ParietalLobe | 195.75 | |
Pituitary | 28.8 | |
Placenta | 63.1 | |
Pons | 123.15 | |
PrefrontalCortex | 445.3 | |
Prostate | 9.15 | |
Salivarygland | 17.05 | |
SkeletalMuscle | 21.3 | |
Skin | 10.3 | |
SmoothMuscle | 7.9 | |
Spinalcord | 71.25 | |
SubthalamicNucleus | 266.55 | |
SuperiorCervicalGanglion | 17.35 | |
TemporalLobe | 182.85 | |
Testis | 21.95 | |
TestisGermCell | 8 | |
TestisIntersitial | 6.3 | |
TestisLeydigCell | 7.55 | |
TestisSeminiferousTubule | 6.4 | |
Thalamus | 497.2 | |
Thymus | 41.55 | |
Thyroid | 73.3 | |
Tongue | 7.85 | |
Tonsil | 37.4 | |
Trachea | 17.6 | |
TrigeminalGanglion | 14.4 | |
Uterus | 9.9 | |
UterusCorpus | 11.55 | |
WholeBlood | 90.9 | |
Wholebrain | 475.85 | |
colon | 11.7 | |
pineal_day | 16.3 | |
pineal_night | 18.76 | |
retina | 86.35 | |
small_intestine | 23.1 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_24_P72420
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 7.46 ± 0.32 | |
Basal Forebrain | 7.75 ± 0.17 | |
Basal Part of Pons | 8.2 ± 0.32 | |
Cerebellar Cortex | 7.83 ± 0.35 | |
Cerebellar Nuclei | 7.58 ± 0.32 | |
Claustrum | 8.21 ± 0.56 | |
Epithalamus | 6.35 ± 1 | |
Frontal Lobe | 7.37 ± 0.54 | |
Globus Pallidus | 7.21 ± 0.33 | |
Hypothalamus | 7.02 ± 0.61 | |
Insula | 7.12 ± 0.51 | |
Limbic Lobe | 7.37 ± 0.73 | |
Mesencephalon | 7.4 ± 0.49 | |
Myelencephalon | 7.48 ± 0.6 | |
Occipital Lobe | 7.48 ± 0.43 | |
Parietal Lobe | 7.53 ± 0.61 | |
Pontine Tegmentum | 7.39 ± 0.54 | |
Striatum | 7.51 ± 0.59 | |
Subthalamus | 7.34 ± 0.05 | |
Temporal Lobe | 7.38 ± 0.55 | |
Thalamus | 7.9 ± 0.34 | |
White Matter | 8.99 ± 0.79 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Elmo1 | CB | Cerebellum | 40.19 | |
80.8 | ||||
Elmo1 | CTX | Cerebral cortex | 40.18 | |
35.8 | ||||
Elmo1 | HIP | Hippocampal region | 11.17 | |
14.96 | ||||
Elmo1 | HPF | Hippocampal formation | 20.89 | |
24.36 | ||||
Elmo1 | HY | Hypothalamus | 28.22 | |
28.16 | ||||
Elmo1 | LSX | Lateral septal complex | 42.76 | |
38.81 | ||||
Elmo1 | MB | Midbrain | 36.4 | |
41.11 | ||||
Elmo1 | MY | Medulla | 32.64 | |
48.93 | ||||
Elmo1 | OLF | Olfactory bulb | 51.68 | |
53.05 | ||||
Elmo1 | P | Pons | 37.96 | |
59.07 | ||||
Elmo1 | PAL | Pallidum | 60.23 | |
83.33 | ||||
Elmo1 | RHP | Retrohippocampal region | 34.43 | |
35 | ||||
Elmo1 | sAMY | Striatum-like amygdalar nuclei | 57.8 | |
58.01 | ||||
Elmo1 | STR | Striatum | 66.27 | |
62.28 | ||||
Elmo1 | STRd | Striatum dorsal region | 65.72 | |
62.14 | ||||
Elmo1 | STRv | Striatum ventral region | 79.73 | |
75.65 | ||||
Elmo1 | TH | Thalamus | 82.43 | |
100 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
ELMO1_HUMAN_218 | 18 | 218 | 235 | LLDLENIQIPDAPPPIPK | PRIDE |
PAp00008425 | 23 | 585 | 607 | VLHYGDLEESPQGEVPHDSLQDK | Peptide Atlas |