Annotation Detail for FCHSD2
Basic Information Top
| Gene Symbol: | FCHSD2 ( KIAA0769,NWK,SH3MD3 ) |
|---|---|
| Gene Full Name: | FCH and double SH3 domains 2 |
| Band: | 11q13.4 |
| Quick Links | Entrez ID:9873; OMIM: NA; Uniprot ID:FCSD2_HUMAN; ENSEMBL ID: ENSG00000137478; HGNC ID: 29114 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.577053
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 24 / 564012 | 42 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 61 / 1939121 | 31 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 104 / 3360307 | 30 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 38 / 1100989 | 34 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 2 / 89626 | 22 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 18 / 336974 | 53 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 17 / 91610 | 185 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 14 / 330442 | 42 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P302038
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.27 ± 0.27 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.71 ± 0.21 | |
| Basal Part of Pons | 5.23 ± 0.41 | |
| Cerebellar Cortex | 5.32 ± 0.24 | |
| Cerebellar Nuclei | 5.32 ± 0.37 | |
| Claustrum | 5.56 ± 0.36 | |
| Epithalamus | 5.3 ± 0.4 | |
| Frontal Lobe | 5.2 ± 0.42 | |
| Globus Pallidus | 6.37 ± 0.28 | |
| Hypothalamus | 5.38 ± 0.6 | |
| Insula | 5.3 ± 0.35 | |
| Limbic Lobe | 5.15 ± 0.5 | |
| Mesencephalon | 5.5 ± 0.64 | |
| Myelencephalon | 5.31 ± 0.51 | |
| Occipital Lobe | 5.13 ± 0.51 | |
| Parietal Lobe | 5.31 ± 0.57 | |
| Pontine Tegmentum | 5.36 ± 0.44 | |
| Striatum | 5.62 ± 0.53 | |
| Subthalamus | 5.12 ± 0.25 | |
| Temporal Lobe | 5.28 ± 0.34 | |
| Thalamus | 5.52 ± 0.33 | |
| White Matter | 6.18 ± 0.25 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Fchsd2 | CB | Cerebellum | 8.44 | |
| 8.53 | | |||
| Fchsd2 | CTX | Cerebral cortex | 2.2 | |
| 2.11 | | |||
| Fchsd2 | HIP | Hippocampal region | 4.32 | |
| 4.12 | | |||
| Fchsd2 | HPF | Hippocampal formation | 3.42 | |
| 2.97 | | |||
| Fchsd2 | HY | Hypothalamus | 2.03 | |
| 1.49 | | |||
| Fchsd2 | LSX | Lateral septal complex | 0.95 | |
| 0.69 | | |||
| Fchsd2 | MB | Midbrain | 6.41 | |
| 5.81 | | |||
| Fchsd2 | MY | Medulla | 12.14 | |
| 12.43 | | |||
| Fchsd2 | OLF | Olfactory bulb | 6.88 | |
| 6.76 | | |||
| Fchsd2 | P | Pons | 8.41 | |
| 8.89 | | |||
| Fchsd2 | PAL | Pallidum | 2.82 | |
| 2.17 | | |||
| Fchsd2 | RHP | Retrohippocampal region | 1.9 | |
| 1.38 | | |||
| Fchsd2 | sAMY | Striatum-like amygdalar nuclei | 1.84 | |
| 1.34 | | |||
| Fchsd2 | STR | Striatum | 1.56 | |
| 1.16 | | |||
| Fchsd2 | STRd | Striatum dorsal region | 0.85 | |
| 0.7 | | |||
| Fchsd2 | STRv | Striatum ventral region | 3.91 | |
| 2.56 | | |||
| Fchsd2 | TH | Thalamus | 4.84 | |
| 4.14 | |