AutismKB 2.0

Annotation Detail for ZBED4


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Basic Information Top
Gene Symbol:ZBED4 ( - )
Gene Full Name: zinc finger, BED-type containing 4
Band: 22q13.33
Quick LinksEntrez ID:9889; OMIM: 612552; Uniprot ID:ZBED4_HUMAN; ENSEMBL ID: ENSG00000100426; HGNC ID: 20721
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst2 / 6231932
fetus24 / 56401242
neonate1 / 3109732
infant0 / 236200 
juvenile2 / 5555635
adult32 / 193912116
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor4 / 9417842
cervical tumor3 / 3436687
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor9 / 26384534
glioma0 / 1068830 
head and neck tumor4 / 13630229
kidney tumor2 / 6895929
leukemia2 / 9584220
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal81 / 336030724
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer4 / 10268038
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites2 / 4001549
bladder1 / 2975733
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain22 / 110098919
cervix3 / 4817162
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye8 / 21105437
heart2 / 8962622
intestine5 / 23447221
kidney4 / 21177718
larynx1 / 2414541
liver4 / 20774319
lung7 / 33697420
lymph0 / 442700 
lymph node9 / 9161098
mammary gland4 / 15327126
mouth2 / 6705229
muscle4 / 10771537
nerve1 / 1576863
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate6 / 18934531
salivary gland0 / 201550 
skin4 / 21057418
spleen1 / 5395218
stomach7 / 9661972
testis6 / 33044218
thymus4 / 8113149
thyroid1 / 4747321
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204799_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.3
Adipocyte6.2
AdrenalCortex7.5
Adrenalgland5.7
Amygdala6.55
Appendix6.95
AtrioventricularNode6.4
BDCA4+_DentriticCells9.65
Bonemarrow8.6
BronchialEpithelialCells6.55
CD105+_Endothelial7.3
CD14+_Monocytes7
CD19+_BCells(neg._sel.)7.05
CD33+_Myeloid9.1
CD34+15.7
CD4+_Tcells6.45
CD56+_NKCells18.7
CD71+_EarlyErythroid6.05
CD8+_Tcells7.05
CardiacMyocytes10
Caudatenucleus5.7
Cerebellum5.35
CerebellumPeduncles7.85
CiliaryGanglion5.2
CingulateCortex6.95
Colorectaladenocarcinoma6.55
DorsalRootGanglion6.15
FetalThyroid6.35
Fetalbrain7.35
Fetalliver5.7
Fetallung5.25
GlobusPallidus4.95
Heart9.9
Hypothalamus6.75
Kidney5.6
Leukemia_chronicMyelogenousK-5625.9
Leukemia_promyelocytic-HL-607.45
Leukemialymphoblastic(MOLT-4)7.75
Liver9.6
Lung7.5
Lymphnode5.65
Lymphoma_burkitts(Daudi)15.15
Lymphoma_burkitts(Raji)12.3
MedullaOblongata5.7
OccipitalLobe5.6
OlfactoryBulb5.05
Ovary4.55
Pancreas5.45
PancreaticIslet6.9
ParietalLobe7.1
Pituitary7.45
Placenta6.6
Pons6.2
PrefrontalCortex7.95
Prostate7.4
Salivarygland5.2
SkeletalMuscle7.9
Skin6.25
SmoothMuscle7.55
Spinalcord6.7
SubthalamicNucleus5.9
SuperiorCervicalGanglion8.6
TemporalLobe5.95
Testis5.5
TestisGermCell5.4
TestisIntersitial5.35
TestisLeydigCell6.6
TestisSeminiferousTubule5.35
Thalamus6.6
Thymus8.15
Thyroid7.85
Tongue7.05
Tonsil6.85
Trachea5.3
TrigeminalGanglion6.9
Uterus5.2
UterusCorpus6.55
WholeBlood7.15
Wholebrain5.4
colon6.6
pineal_day7.78
pineal_night7.68
retina7.825
small_intestine6.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P892353
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.36 ± 0.24
Basal Forebrain6.29 ± 0.32
Basal Part of Pons6.45 ± 0.29
Cerebellar Cortex6.88 ± 0.23
Cerebellar Nuclei6.72 ± 0.33
Claustrum6.76 ± 0.67
Epithalamus6.29 ± 0.38
Frontal Lobe6.47 ± 0.4
Globus Pallidus6.47 ± 0.42
Hypothalamus6.37 ± 0.28
Insula6.41 ± 0.33
Limbic Lobe6.57 ± 0.37
Mesencephalon6.51 ± 0.47
Myelencephalon6.53 ± 0.42
Occipital Lobe6.91 ± 0.42
Parietal Lobe6.54 ± 0.31
Pontine Tegmentum6.54 ± 0.45
Striatum6.41 ± 0.43
Subthalamus6.21 ± 0.28
Temporal Lobe6.4 ± 0.37
Thalamus6.41 ± 0.38
White Matter7.17 ± 0.38
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Zbed4CBCerebellum8.3
8.47
Zbed4CTXCerebral cortex28.61
19.36
Zbed4HIPHippocampal region18.97
17.85
Zbed4HPFHippocampal formation23.34
19.95
Zbed4HYHypothalamus12.2
9.64
Zbed4LSXLateral septal complex2.51
1.78
Zbed4MBMidbrain6.22
5.45
Zbed4MYMedulla9.56
9.92
Zbed4OLFOlfactory bulb38.91
28.62
Zbed4PPons11.62
13.14
Zbed4PALPallidum7.7
6.49
Zbed4RHPRetrohippocampal region32.92
24.34
Zbed4sAMYStriatum-like amygdalar nuclei10.01
6.5
Zbed4STRStriatum8.68
6.42
Zbed4STRdStriatum dorsal region7.09
5.19
Zbed4STRvStriatum ventral region15.32
11.59
Zbed4THThalamus6.69
4.99
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002238 11 382 392 ESPSASSSPDR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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