AutismKB 2.0

Annotation Detail for RBM19


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Basic Information Top
Gene Symbol:RBM19 ( DKFZp586F1023,KIAA0682 )
Gene Full Name: RNA binding motif protein 19
Band: 12q24.13-q24.21
Quick LinksEntrez ID:9904; OMIM: NA; Uniprot ID:RBM19_HUMAN; ENSEMBL ID: ENSG00000122965; HGNC ID: 29098
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst5 / 6231980
fetus23 / 56401240
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult41 / 193912121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor3 / 11424626
esophageal tumor1 / 1729057
gastrointestinal tumor7 / 11936958
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia3 / 9584231
liver tumor7 / 9635972
lung tumor3 / 10312729
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal86 / 336030725
ovarian tumor4 / 7668252
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer2 / 10268019
retinoblastoma2 / 4635643
skin tumor12 / 12494996
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites4 / 4001599
bladder0 / 297570 
blood1 / 1234788
bone3 / 7165541
bone marrow0 / 488010 
brain22 / 110098919
cervix1 / 4817120
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus1 / 2020949
eye9 / 21105442
heart0 / 896260 
intestine6 / 23447225
kidney7 / 21177733
larynx1 / 2414541
liver24 / 207743115
lung14 / 33697441
lymph2 / 4427045
lymph node2 / 9161021
mammary gland1 / 1532716
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary4 / 10205139
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate3 / 18934515
salivary gland0 / 201550 
skin13 / 21057461
spleen0 / 539520 
stomach1 / 9661910
testis14 / 33044242
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206019_at
Cell line Expression level Expression bar
721_B_lymphoblasts8
Adipocyte6.1
AdrenalCortex6.15
Adrenalgland5.15
Amygdala6.6
Appendix6.05
AtrioventricularNode4.45
BDCA4+_DentriticCells7.1
Bonemarrow6
BronchialEpithelialCells5.85
CD105+_Endothelial6.25
CD14+_Monocytes6.65
CD19+_BCells(neg._sel.)6.65
CD33+_Myeloid8.1
CD34+8.1
CD4+_Tcells8.6
CD56+_NKCells7.55
CD71+_EarlyErythroid5.65
CD8+_Tcells10.85
CardiacMyocytes7.5
Caudatenucleus5.5
Cerebellum5
CerebellumPeduncles7
CiliaryGanglion4.15
CingulateCortex6.25
Colorectaladenocarcinoma6.15
DorsalRootGanglion4.5
FetalThyroid6.05
Fetalbrain6.2
Fetalliver5.4
Fetallung4.95
GlobusPallidus4.35
Heart7.6
Hypothalamus6.85
Kidney4.85
Leukemia_chronicMyelogenousK-5625.6
Leukemia_promyelocytic-HL-605.45
Leukemialymphoblastic(MOLT-4)5
Liver8.3
Lung6.85
Lymphnode5.4
Lymphoma_burkitts(Daudi)8
Lymphoma_burkitts(Raji)8.8
MedullaOblongata5.75
OccipitalLobe5.55
OlfactoryBulb4.85
Ovary4
Pancreas4.9
PancreaticIslet6.55
ParietalLobe6.4
Pituitary7.2
Placenta6.5
Pons5.9
PrefrontalCortex7.85
Prostate7
Salivarygland4.9
SkeletalMuscle6.75
Skin4.5
SmoothMuscle6.9
Spinalcord6.6
SubthalamicNucleus5.5
SuperiorCervicalGanglion7.6
TemporalLobe5.55
Testis5.35
TestisGermCell5.25
TestisIntersitial5.15
TestisLeydigCell6.05
TestisSeminiferousTubule5.35
Thalamus6.35
Thymus4.95
Thyroid7.8
Tongue5.85
Tonsil6
Trachea5
TrigeminalGanglion5.9
Uterus5.15
UterusCorpus5.4
WholeBlood6.85
Wholebrain5.4
colon6.2
pineal_day7.76
pineal_night7.78
retina7.625
small_intestine5.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P204119
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.3 ± 0.35
Basal Forebrain6.34 ± 0.14
Basal Part of Pons6.27 ± 0.23
Cerebellar Cortex6.05 ± 0.25
Cerebellar Nuclei6.1 ± 0.37
Claustrum6.46 ± 0.45
Epithalamus6.15 ± 0.36
Frontal Lobe6.04 ± 0.31
Globus Pallidus6.63 ± 0.17
Hypothalamus5.89 ± 0.2
Insula6.13 ± 0.29
Limbic Lobe6.31 ± 0.39
Mesencephalon6.14 ± 0.37
Myelencephalon6.24 ± 0.35
Occipital Lobe6.69 ± 0.49
Parietal Lobe6.28 ± 0.29
Pontine Tegmentum6.19 ± 0.37
Striatum6.71 ± 0.29
Subthalamus6.12 ± 0.33
Temporal Lobe6.15 ± 0.28
Thalamus6.31 ± 0.39
White Matter6.96 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rbm19CBCerebellum18.73
23.05
Rbm19CTXCerebral cortex22.74
16.81
Rbm19HIPHippocampal region19.87
24.35
Rbm19HPFHippocampal formation16.72
17.44
Rbm19HYHypothalamus11.74
8.97
Rbm19LSXLateral septal complex15.99
11.54
Rbm19MBMidbrain12.25
11.74
Rbm19MYMedulla23.33
29.27
Rbm19OLFOlfactory bulb16.59
13.45
Rbm19PPons14.74
16.31
Rbm19PALPallidum15.71
14.43
Rbm19RHPRetrohippocampal region12.05
9.23
Rbm19sAMYStriatum-like amygdalar nuclei14.34
10.49
Rbm19STRStriatum14.46
10.37
Rbm19STRdStriatum dorsal region12.33
8.64
Rbm19STRvStriatum ventral region21.7
15.49
Rbm19THThalamus26.25
21.78
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000318 14 890 903 AFNALCHSTHLYGR Peptide Atlas
RBM19_HUMAN_309 15 309 323 NVMEFLAPLKPVAIR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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