AutismKB 2.0

Annotation Detail for NCAPD2


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Basic Information Top
Gene Symbol:NCAPD2 ( CAP-D2,CNAP1,KIAA0159,hCAP-D2 )
Gene Full Name: non-SMC condensin I complex, subunit D2
Band: 12p13.31
Quick LinksEntrez ID:9918; OMIM: NA; Uniprot ID:CND1_HUMAN; ENSEMBL ID: ENSG00000010292; HGNC ID: 24305
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst19 / 62319304
fetus25 / 56401244
neonate5 / 31097160
infant4 / 23620169
juvenile4 / 5555671
adult182 / 193912193
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma2 / 17475114
breast (mammary gland) tumor14 / 94178148
cervical tumor4 / 34366116
chondrosarcoma4 / 8282348
colorectal tumor19 / 114246166
esophageal tumor5 / 17290289
gastrointestinal tumor4 / 11936933
germ cell tumor115 / 263845435
glioma7 / 10688365
head and neck tumor14 / 136302102
kidney tumor9 / 68959130
leukemia15 / 95842156
liver tumor12 / 96359124
lung tumor17 / 103127164
lymphoma13 / 71755181
non-neoplasia3 / 9725030
normal194 / 336030757
ovarian tumor18 / 76682234
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS26 / 125680206
prostate cancer4 / 10268038
retinoblastoma8 / 46356172
skin tumor9 / 12494972
soft tissue/muscle tissue tumor16 / 125191127
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites2 / 4001549
bladder5 / 29757168
blood17 / 123478137
bone0 / 716550 
bone marrow2 / 4880140
brain62 / 110098956
cervix4 / 4817183
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue34 / 215722157
esophagus5 / 20209247
eye15 / 21105471
heart1 / 8962611
intestine23 / 23447298
kidney12 / 21177756
larynx1 / 2414541
liver16 / 20774377
lung25 / 33697474
lymph9 / 44270203
lymph node34 / 91610371
mammary gland22 / 153271143
mouth13 / 67052193
muscle7 / 10771564
nerve0 / 157680 
ovary23 / 102051225
pancreas7 / 21481232
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta24 / 28082585
prostate10 / 18934552
salivary gland0 / 201550 
skin15 / 21057471
spleen0 / 539520 
stomach6 / 9661962
testis97 / 330442293
thymus20 / 81131246
thyroid0 / 474730 
tonsil2 / 16999117
trachea4 / 5241376
umbilical cord7 / 13680511
uterus23 / 23287898
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201774_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts103.15
Adipocyte4.05
AdrenalCortex4.25
Adrenalgland3.5
Amygdala4.4
Appendix4.2
AtrioventricularNode3.15
BDCA4+_DentriticCells10
Bonemarrow6.7
BronchialEpithelialCells4.2
CD105+_Endothelial27.95
CD14+_Monocytes4.5
CD19+_BCells(neg._sel.)4.55
CD33+_Myeloid5.6
CD34+40.05
CD4+_Tcells5.85
CD56+_NKCells7.85
CD71+_EarlyErythroid16.05
CD8+_Tcells6.4
CardiacMyocytes7.3
Caudatenucleus3.7
Cerebellum3.35
CerebellumPeduncles4.7
CiliaryGanglion2.9
CingulateCortex4.25
Colorectaladenocarcinoma21.05
DorsalRootGanglion3.15
FetalThyroid4
Fetalbrain4.05
Fetalliver6.35
Fetallung3.5
GlobusPallidus3
Heart5.3
Hypothalamus4.5
Kidney3.35
Leukemia_chronicMyelogenousK-5623.9
Leukemia_promyelocytic-HL-6014.65
Leukemialymphoblastic(MOLT-4)35.6
Liver5.5
Lung4.55
Lymphnode4.05
Lymphoma_burkitts(Daudi)39
Lymphoma_burkitts(Raji)8.8
MedullaOblongata3.85
OccipitalLobe3.7
OlfactoryBulb3.25
Ovary2.75
Pancreas3.35
PancreaticIslet4.35
ParietalLobe4.35
Pituitary4.85
Placenta4.4
Pons3.9
PrefrontalCortex5.15
Prostate4.9
Salivarygland3.4
SkeletalMuscle4.7
Skin3.2
SmoothMuscle4.8
Spinalcord4.45
SubthalamicNucleus3.75
SuperiorCervicalGanglion4.8
TemporalLobe3.75
Testis3.95
TestisGermCell3.6
TestisIntersitial3.7
TestisLeydigCell4.15
TestisSeminiferousTubule3.8
Thalamus4.25
Thymus15.7
Thyroid5.3
Tongue4.05
Tonsil4.1
Trachea3.45
TrigeminalGanglion4.15
Uterus3.4
UterusCorpus3.75
WholeBlood4.65
Wholebrain3.45
colon4.25
pineal_day5.36
pineal_night5.56
retina5.075
small_intestine4.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5025_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.19 ± 0.33
Basal Forebrain5.22 ± 0.55
Basal Part of Pons5.44 ± 0.64
Cerebellar Cortex5.2 ± 0.26
Cerebellar Nuclei5.73 ± 0.29
Claustrum5.46 ± 0.49
Epithalamus5.63 ± 0.41
Frontal Lobe5.31 ± 0.43
Globus Pallidus6.36 ± 0.25
Hypothalamus4.89 ± 0.36
Insula5.06 ± 0.31
Limbic Lobe5.43 ± 0.48
Mesencephalon5.44 ± 0.44
Myelencephalon5.52 ± 0.45
Occipital Lobe5.79 ± 0.55
Parietal Lobe5.48 ± 0.37
Pontine Tegmentum5.46 ± 0.44
Striatum5.9 ± 0.41
Subthalamus5.51 ± 0.23
Temporal Lobe5.28 ± 0.35
Thalamus5.59 ± 0.39
White Matter7.2 ± 0.3
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
2810406C15RikCBCerebellum7.96
9.25
2810406C15RikCTXCerebral cortex25.92
17.53
2810406C15RikHIPHippocampal region6.65
5.58
2810406C15RikHPFHippocampal formation11.32
8.61
2810406C15RikHYHypothalamus4.98
3.52
2810406C15RikLSXLateral septal complex2.85
2.23
2810406C15RikMBMidbrain4.8
4.05
2810406C15RikMYMedulla15.94
15.89
2810406C15RikOLFOlfactory bulb28.32
21.68
2810406C15RikPPons9.63
9.63
2810406C15RikPALPallidum11.16
9.13
2810406C15RikRHPRetrohippocampal region20.61
13.83
2810406C15RiksAMYStriatum-like amygdalar nuclei12.94
8.67
2810406C15RikSTRStriatum8.12
5.92
2810406C15RikSTRdStriatum dorsal region7.47
5.72
2810406C15RikSTRvStriatum ventral region9.45
5.69
2810406C15RikTHThalamus8.65
6.02
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CND1_HUMAN_1073 13 1073 1085 SNLMVATGDLAIR PRIDE
CND1_HUMAN_1325 19 1325 1343 YQPLASTASDNDFVTPEPR PRIDE
CND1_HUMAN_1387 7 1387 1393 KTTPILR PRIDE
CND1_HUMAN_422 18 422 439 NAIQLLASFLANNPFSCK PRIDE
CND1_HUMAN_584 14 584 597 ESTGNMVTGQTVCK PRIDE
CND1_HUMAN_92 19 92 110 HSQELPAILDDTTLSGSDR PRIDE
PAp00001773 19 363 381 DQFLDTLQAHGHDVNSFVR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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