Annotation Detail for GFPT2
Basic Information Top
| Gene Symbol: | GFPT2 ( FLJ10380,GFAT2 ) |
|---|---|
| Gene Full Name: | glutamine-fructose-6-phosphate transaminase 2 |
| Band: | 5q35.3 |
| Quick Links | Entrez ID:9945; OMIM: 603865; Uniprot ID:GFPT2_HUMAN; ENSEMBL ID: ENSG00000131459; HGNC ID: 4242 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.696497
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 7 / 70761 | 98 |  |
| blastocyst | 7 / 62319 | 112 | |
| fetus | 11 / 564012 | 19 |  |
| neonate | 2 / 31097 | 64 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 72 / 1939121 | 37 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 23 / 263845 | 87 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 17 / 103127 | 164 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 103 / 3360307 | 30 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 14 / 124949 | 112 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 28 / 1100989 | 25 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 12 / 149255 | 80 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 15 / 215722 | 69 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 7 / 89626 | 78 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 19 / 336974 | 56 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 19 / 210574 | 90 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 6 / 96619 | 62 | |
| testis | 23 / 330442 | 69 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 4 / 51780 | 77 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 205100_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 5.05 | |
| Adipocyte | 6.85 | |
| AdrenalCortex | 4.25 | |
| Adrenalgland | 3.5 | |
| Amygdala | 4.35 | |
| Appendix | 4.2 | |
| AtrioventricularNode | 3.1 | |
| BDCA4+_DentriticCells | 4.55 | |
| Bonemarrow | 4.1 | |
| BronchialEpithelialCells | 4.1 | |
| CD105+_Endothelial | 4.2 | |
| CD14+_Monocytes | 4.35 | |
| CD19+_BCells(neg._sel.) | 4.45 | |
| CD33+_Myeloid | 5.3 | |
| CD34+ | 5.25 | |
| CD4+_Tcells | 4.65 | |
| CD56+_NKCells | 4.85 | |
| CD71+_EarlyErythroid | 3.9 | |
| CD8+_Tcells | 4.1 | |
| CardiacMyocytes | 56.2 | |
| Caudatenucleus | 3.75 | |
| Cerebellum | 3.7 | |
| CerebellumPeduncles | 4.8 | |
| CiliaryGanglion | 2.9 | |
| CingulateCortex | 4.3 | |
| Colorectaladenocarcinoma | 4.2 | |
| DorsalRootGanglion | 3.9 | |
| FetalThyroid | 4.05 | |
| Fetalbrain | 4.2 | |
| Fetalliver | 3.55 | |
| Fetallung | 3.55 | |
| GlobusPallidus | 3.05 | |
| Heart | 5.2 | |
| Hypothalamus | 4.65 | |
| Kidney | 3.35 | |
| Leukemia_chronicMyelogenousK-562 | 3.7 | |
| Leukemia_promyelocytic-HL-60 | 3.65 | |
| Leukemialymphoblastic(MOLT-4) | 3.25 | |
| Liver | 5.45 | |
| Lung | 4.65 | |
| Lymphnode | 3.65 | |
| Lymphoma_burkitts(Daudi) | 5.25 | |
| Lymphoma_burkitts(Raji) | 5.8 | |
| MedullaOblongata | 3.9 | |
| OccipitalLobe | 3.8 | |
| OlfactoryBulb | 3.4 | |
| Ovary | 3.45 | |
| Pancreas | 3.65 | |
| PancreaticIslet | 4.45 | |
| ParietalLobe | 4.35 | |
| Pituitary | 4.9 | |
| Placenta | 4.65 | |
| Pons | 4.55 | |
| PrefrontalCortex | 5.75 | |
| Prostate | 4.85 | |
| Salivarygland | 3.35 | |
| SkeletalMuscle | 4.65 | |
| Skin | 3.2 | |
| SmoothMuscle | 317.95 |  |
| Spinalcord | 5.55 | |
| SubthalamicNucleus | 3.75 | |
| SuperiorCervicalGanglion | 4.8 | |
| TemporalLobe | 4.05 | |
| Testis | 3.65 | |
| TestisGermCell | 3.6 | |
| TestisIntersitial | 3.5 | |
| TestisLeydigCell | 4.15 | |
| TestisSeminiferousTubule | 4.85 | |
| Thalamus | 4.25 | |
| Thymus | 3.3 | |
| Thyroid | 5.2 | |
| Tongue | 4.1 | |
| Tonsil | 4 | |
| Trachea | 3.55 | |
| TrigeminalGanglion | 4.6 | |
| Uterus | 3.65 | |
| UterusCorpus | 3.7 | |
| WholeBlood | 4.45 | |
| Wholebrain | 3.6 | |
| colon | 4.2 | |
| pineal_day | 5.28 | |
| pineal_night | 5.16 | |
| retina | 6.6 | |
| small_intestine | 3.95 | |
- Probe name: CUST_7986_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.18 ± 1.05 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.44 ± 0.22 | |
| Basal Part of Pons | 2.31 ± 0.3 | |
| Cerebellar Cortex | 3.11 ± 0.58 | |
| Cerebellar Nuclei | 3 ± 0.89 | |
| Claustrum | 3.17 ± 0.65 | |
| Epithalamus | 3.19 ± 0.72 | |
| Frontal Lobe | 2.64 ± 0.84 | |
| Globus Pallidus | 2.43 ± 0.76 | |
| Hypothalamus | 2.66 ± 0.84 | |
| Insula | 2.15 ± 1 | |
| Limbic Lobe | 2.61 ± 0.73 | |
| Mesencephalon | 2.94 ± 0.86 | |
| Myelencephalon | 2.72 ± 0.82 | |
| Occipital Lobe | 2.77 ± 0.68 | |
| Parietal Lobe | 2.68 ± 0.94 | |
| Pontine Tegmentum | 2.64 ± 0.84 | |
| Striatum | 2.41 ± 0.66 | |
| Subthalamus | 2.44 ± 0.68 | |
| Temporal Lobe | 2.75 ± 0.8 | |
| Thalamus | 2.59 ± 0.8 | |
| White Matter | 2.43 ± 0.47 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gfpt2 | CB | Cerebellum | 1.45 | |
| 2.02 | | |||
| Gfpt2 | CTX | Cerebral cortex | 7.92 | |
| 6.08 | | |||
| Gfpt2 | HIP | Hippocampal region | 3.87 | |
| 4.22 | | |||
| Gfpt2 | HPF | Hippocampal formation | 4.55 | |
| 4.31 | | |||
| Gfpt2 | HY | Hypothalamus | 0.69 | |
| 0.74 | | |||
| Gfpt2 | LSX | Lateral septal complex | 1.56 | |
| 1.45 | | |||
| Gfpt2 | MB | Midbrain | 1.39 | |
| 2.25 | | |||
| Gfpt2 | MY | Medulla | 1.89 | |
| 2.5 | | |||
| Gfpt2 | OLF | Olfactory bulb | 11.04 | |
| 8.33 | | |||
| Gfpt2 | P | Pons | 1.5 | |
| 3.32 | | |||
| Gfpt2 | PAL | Pallidum | 0.7 | |
| 0.56 | | |||
| Gfpt2 | RHP | Retrohippocampal region | 5.83 | |
| 4.61 | | |||
| Gfpt2 | sAMY | Striatum-like amygdalar nuclei | 2.16 | |
| 1.63 | | |||
| Gfpt2 | STR | Striatum | 1.91 | |
| 1.64 | | |||
| Gfpt2 | STRd | Striatum dorsal region | 1.21 | |
| 1.02 | | |||
| Gfpt2 | STRv | Striatum ventral region | 4.08 | |
| 3.37 | | |||
| Gfpt2 | TH | Thalamus | 1.4 | |
| 1.38 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| GFPT2_HUMAN_173 | 14 | 173 | 186 | VIQQLEGAFALVFK | PRIDE |
| GFPT2_HUMAN_319 | 9 | 319 | 327 | GNFSAFMQK | PRIDE |
| GFPT2_HUMAN_328 | 14 | 328 | 341 | EIFEQPESVFNTMR | PRIDE |
| PAp00002245 | 20 | 458 | 477 | ETDCGVHINAGPEIGVASTK | Peptide Atlas |