AutismKB 2.0

Annotation Detail for HS3ST3B1


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Basic Information Top
Gene Symbol:HS3ST3B1 ( 30ST3B1,3OST3B1 )
Gene Full Name: heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
Band: 17p12
Quick LinksEntrez ID:9953; OMIM: 604058; Uniprot ID:HS3SB_HUMAN; ENSEMBL ID: ENSG00000125430; HGNC ID: 5198
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus24 / 56401242
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult29 / 193912114
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia0 / 972500 
normal63 / 336030718
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain2 / 11009891
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye4 / 21105418
heart0 / 896260 
intestine0 / 2344720 
kidney2 / 2117779
larynx0 / 241450 
liver9 / 20774343
lung4 / 33697411
lymph0 / 442700 
lymph node2 / 9161021
mammary gland0 / 1532710 
mouth3 / 6705244
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta21 / 28082574
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus6 / 8113173
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221062_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.7
Adipocyte5.65
AdrenalCortex6.35
Adrenalgland5.05
Amygdala5.75
Appendix6.6
AtrioventricularNode4.65
BDCA4+_DentriticCells6
Bonemarrow6.65
BronchialEpithelialCells5.4
CD105+_Endothelial5.75
CD14+_Monocytes6.05
CD19+_BCells(neg._sel.)6.8
CD33+_Myeloid7.3
CD34+6.9
CD4+_Tcells6
CD56+_NKCells6.65
CD71+_EarlyErythroid5.6
CD8+_Tcells5
CardiacMyocytes7.9
Caudatenucleus5.2
Cerebellum4.7
CerebellumPeduncles6.8
CiliaryGanglion4.25
CingulateCortex6.1
Colorectaladenocarcinoma5.65
DorsalRootGanglion4.65
FetalThyroid5.65
Fetalbrain5.45
Fetalliver5.2
Fetallung4.45
GlobusPallidus4.4
Heart10.1
Hypothalamus6.1
Kidney5.05
Leukemia_chronicMyelogenousK-5625.2
Leukemia_promyelocytic-HL-605.05
Leukemialymphoblastic(MOLT-4)4.2
Liver8.55
Lung6.3
Lymphnode4.85
Lymphoma_burkitts(Daudi)7.75
Lymphoma_burkitts(Raji)8.75
MedullaOblongata5.2
OccipitalLobe5.05
OlfactoryBulb4.55
Ovary4.05
Pancreas4.65
PancreaticIslet6.15
ParietalLobe6.3
Pituitary6.75
Placenta5.8
Pons5.7
PrefrontalCortex6.95
Prostate6.55
Salivarygland4.75
SkeletalMuscle7.8
Skin4.5
SmoothMuscle6.4
Spinalcord6.1
SubthalamicNucleus5.4
SuperiorCervicalGanglion7.5
TemporalLobe5.45
Testis4.9
TestisGermCell4.65
TestisIntersitial4.75
TestisLeydigCell6.05
TestisSeminiferousTubule4.95
Thalamus5.85
Thymus4.35
Thyroid7.2
Tongue5.95
Tonsil5.65
Trachea4.7
TrigeminalGanglion6.2
Uterus4.6
UterusCorpus6.05
WholeBlood6.3
Wholebrain4.8
colon5.75
pineal_day7.22
pineal_night6.8
retina6.95
small_intestine5.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10911_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.65 ± 1.11
Basal Forebrain1.96 ± 0.21
Basal Part of Pons1.92 ± 0.44
Cerebellar Cortex2.59 ± 0.73
Cerebellar Nuclei2.39 ± 0.69
Claustrum2.86 ± 0.77
Epithalamus1.81 ± 0.81
Frontal Lobe2.33 ± 0.74
Globus Pallidus2.42 ± 0.76
Hypothalamus2.26 ± 0.78
Insula2.27 ± 0.8
Limbic Lobe2.33 ± 0.65
Mesencephalon2.4 ± 0.78
Myelencephalon2.41 ± 0.65
Occipital Lobe2.16 ± 0.64
Parietal Lobe2.18 ± 0.7
Pontine Tegmentum2.29 ± 0.7
Striatum1.96 ± 0.73
Subthalamus2.34 ± 0.64
Temporal Lobe2.25 ± 0.78
Thalamus2.35 ± 0.62
White Matter2.58 ± 0.66
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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