AutismKB 2.0

Annotation Detail for HS3ST2


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:HS3ST2 ( 30ST2,3OST2 )
Gene Full Name: heparan sulfate (glucosamine) 3-O-sulfotransferase 2
Band: 16p12.2
Quick LinksEntrez ID:9956; OMIM: 604056; Uniprot ID:HS3S2_HUMAN; ENSEMBL ID: ENSG00000122254; HGNC ID: 5195
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus0 / 5640120 
neonate1 / 3109732
infant0 / 236200 
juvenile1 / 5555617
adult15 / 19391217
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult8 / 19391214
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor3 / 26384511
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal20 / 33603075
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor5 / 26384518
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal18 / 33603075
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain9 / 11009898
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine1 / 2344724
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung9 / 33697426
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone0 / 716550 
bone marrow0 / 488010 
brain15 / 110098913
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219697_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.65
Adipocyte85.15
AdrenalCortex49.5
Adrenalgland38.1
Amygdala82.55
Appendix62.8
AtrioventricularNode81.95
BDCA4+_DentriticCells12.5
Bonemarrow48.85
BronchialEpithelialCells38.1
CD105+_Endothelial20.5
CD14+_Monocytes25.3
CD19+_BCells(neg._sel.)11.65
CD33+_Myeloid33.1
CD34+18.7
CD4+_Tcells17.35
CD56+_NKCells18.8
CD71+_EarlyErythroid14.8
CD8+_Tcells12.7
CardiacMyocytes36.2
Caudatenucleus39.3
Cerebellum40.15
CerebellumPeduncles33.85
CiliaryGanglion87.35
CingulateCortex79.8
Colorectaladenocarcinoma28.75
DorsalRootGanglion105
FetalThyroid28.65
Fetalbrain95.55
Fetalliver31.4
Fetallung26.45
GlobusPallidus82.3
Heart37.8
Hypothalamus36.15
Kidney30.2
Leukemia_chronicMyelogenousK-56232.95
Leukemia_promyelocytic-HL-6025.35
Leukemialymphoblastic(MOLT-4)24.75
Liver40.3
Lung94.35
Lymphnode72.15
Lymphoma_burkitts(Daudi)38
Lymphoma_burkitts(Raji)40
MedullaOblongata52.9
OccipitalLobe94.55
OlfactoryBulb35.65
Ovary38.2
Pancreas26.05
PancreaticIslet33.2
ParietalLobe77.55
Pituitary58.15
Placenta30.9
Pons74.5
PrefrontalCortex89.45
Prostate33.35
Salivarygland55
SkeletalMuscle73.8
Skin65.7
SmoothMuscle21.05
Spinalcord31.05
SubthalamicNucleus89.1
SuperiorCervicalGanglion56.6
TemporalLobe95.85
Testis32.4
TestisGermCell24.05
TestisIntersitial31
TestisLeydigCell48.85
TestisSeminiferousTubule27.9
Thalamus31.05
Thymus22.65
Thyroid35.15
Tongue32.95
Tonsil28.9
Trachea29.8
TrigeminalGanglion69.9
Uterus20
UterusCorpus40.8
WholeBlood31.5
Wholebrain143.7
colon28.75
pineal_day20.66
pineal_night18.58
retina52.525
small_intestine27.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_9375_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.58 ± 0.78
Basal Forebrain4.61 ± 0.99
Basal Part of Pons3.94 ± 0.63
Cerebellar Cortex4.15 ± 0.62
Cerebellar Nuclei4.15 ± 0.54
Claustrum5.91 ± 0.58
Epithalamus3.8 ± 0.76
Frontal Lobe5.02 ± 0.76
Globus Pallidus3.69 ± 0.94
Hypothalamus4.13 ± 0.56
Insula4.72 ± 0.47
Limbic Lobe5.12 ± 0.93
Mesencephalon4.8 ± 0.76
Myelencephalon4.68 ± 0.79
Occipital Lobe4.8 ± 0.94
Parietal Lobe5.06 ± 0.77
Pontine Tegmentum4.79 ± 0.88
Striatum3.2 ± 1.42
Subthalamus4.79 ± 0.16
Temporal Lobe4.96 ± 0.55
Thalamus4.79 ± 0.83
White Matter3.11 ± 1.66
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Hs3st2CBCerebellum18.39
18.37
Hs3st2CTXCerebral cortex87.79
84.49
Hs3st2HIPHippocampal region35.73
39.85
Hs3st2HPFHippocampal formation53.32
44.37
Hs3st2HYHypothalamus23.83
9.97
Hs3st2LSXLateral septal complex65.05
63.69
Hs3st2MBMidbrain29.95
16.82
Hs3st2MYMedulla37.86
29.25
Hs3st2OLFOlfactory bulb75.46
66.97
Hs3st2PPons32.9
21.52
Hs3st2PALPallidum23.48
10.76
Hs3st2RHPRetrohippocampal region72.04
49.61
Hs3st2sAMYStriatum-like amygdalar nuclei52.87
28.62
Hs3st2STRStriatum52.06
27.93
Hs3st2STRdStriatum dorsal region48.98
25.81
Hs3st2STRvStriatum ventral region45.6
22.22
Hs3st2THThalamus43.17
26.1
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved