Annotation Detail for USP3


Gene Symbol: | USP3 ( MGC129878,MGC129879,SIH003,UBP ) |
---|---|
Gene Full Name: | ubiquitin specific peptidase 3 |
Band: | 15q22.3 |
Quick Links | Entrez ID:9960; OMIM: 604728; Uniprot ID:UBP3_HUMAN; ENSEMBL ID: ENSG00000140455; HGNC ID: 12626 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.458499
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 1 / 70761 | 14 | ![]() |
blastocyst | 1 / 62319 | 16 | ![]() |
fetus | 63 / 564012 | 111 | ![]() |
neonate | 2 / 31097 | 64 | ![]() |
infant | 2 / 23620 | 84 | ![]() |
juvenile | 10 / 55556 | 179 | ![]() |
adult | 116 / 1939121 | 59 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 1 / 12794 | 78 | ![]() |
bladder carcinoma | 1 / 17475 | 57 | ![]() |
breast (mammary gland) tumor | 5 / 94178 | 53 | ![]() |
cervical tumor | 3 / 34366 | 87 | ![]() |
chondrosarcoma | 5 / 82823 | 60 | ![]() |
colorectal tumor | 8 / 114246 | 70 | ![]() |
esophageal tumor | 2 / 17290 | 115 | ![]() |
gastrointestinal tumor | 6 / 119369 | 50 | ![]() |
germ cell tumor | 25 / 263845 | 94 | ![]() |
glioma | 5 / 106883 | 46 | ![]() |
head and neck tumor | 12 / 136302 | 88 | ![]() |
kidney tumor | 1 / 68959 | 14 | ![]() |
leukemia | 11 / 95842 | 114 | ![]() |
liver tumor | 2 / 96359 | 20 | ![]() |
lung tumor | 7 / 103127 | 67 | ![]() |
lymphoma | 3 / 71755 | 41 | ![]() |
non-neoplasia | 7 / 97250 | 71 | ![]() |
normal | 245 / 3360307 | 72 | ![]() |
ovarian tumor | 6 / 76682 | 78 | ![]() |
pancreatic tumor | 0 / 104616 | 0 | |
primitive neuroectodermal tumor of the CNS | 14 / 125680 | 111 | ![]() |
prostate cancer | 6 / 102680 | 58 | ![]() |
retinoblastoma | 4 / 46356 | 86 | ![]() |
skin tumor | 4 / 124949 | 32 | ![]() |
soft tissue/muscle tissue tumor | 1 / 125191 | 7 | ![]() |
uterine tumor | 5 / 90257 | 55 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 4 / 13106 | 305 | ![]() |
adrenal gland | 3 / 33197 | 90 | ![]() |
ascites | 2 / 40015 | 49 | ![]() |
bladder | 5 / 29757 | 168 | ![]() |
blood | 22 / 123478 | 178 | ![]() |
bone | 4 / 71655 | 55 | ![]() |
bone marrow | 3 / 48801 | 61 | ![]() |
brain | 90 / 1100989 | 81 | ![]() |
cervix | 3 / 48171 | 62 | ![]() |
connective tissue | 13 / 149255 | 87 | ![]() |
ear | 4 / 16212 | 246 | ![]() |
embryonic tissue | 6 / 215722 | 27 | ![]() |
esophagus | 2 / 20209 | 98 | ![]() |
eye | 13 / 211054 | 61 | ![]() |
heart | 3 / 89626 | 33 | ![]() |
intestine | 20 / 234472 | 85 | ![]() |
kidney | 15 / 211777 | 70 | ![]() |
larynx | 1 / 24145 | 41 | ![]() |
liver | 7 / 207743 | 33 | ![]() |
lung | 28 / 336974 | 83 | ![]() |
lymph | 0 / 44270 | 0 | |
lymph node | 4 / 91610 | 43 | ![]() |
mammary gland | 10 / 153271 | 65 | ![]() |
mouth | 6 / 67052 | 89 | ![]() |
muscle | 3 / 107715 | 27 | ![]() |
nerve | 1 / 15768 | 63 | ![]() |
ovary | 7 / 102051 | 68 | ![]() |
pancreas | 7 / 214812 | 32 | ![]() |
parathyroid | 3 / 20539 | 146 | ![]() |
pharynx | 1 / 41328 | 24 | ![]() |
pituitary gland | 0 / 16585 | 0 | |
placenta | 8 / 280825 | 28 | ![]() |
prostate | 14 / 189345 | 73 | ![]() |
salivary gland | 2 / 20155 | 99 | ![]() |
skin | 7 / 210574 | 33 | ![]() |
spleen | 8 / 53952 | 148 | ![]() |
stomach | 7 / 96619 | 72 | ![]() |
testis | 34 / 330442 | 102 | ![]() |
thymus | 14 / 81131 | 172 | ![]() |
thyroid | 4 / 47473 | 84 | ![]() |
tonsil | 0 / 16999 | 0 | |
trachea | 2 / 52413 | 38 | ![]() |
umbilical cord | 0 / 13680 | 0 | |
uterus | 15 / 232878 | 64 | ![]() |
vascular | 5 / 51780 | 96 | ![]() |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 221654_s_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 150.6 | ![]() |
Adipocyte | 6.9 | ![]() |
AdrenalCortex | 6 | ![]() |
Adrenalgland | 5.45 | ![]() |
Amygdala | 6.1 | ![]() |
Appendix | 6.65 | ![]() |
AtrioventricularNode | 4.8 | ![]() |
BDCA4+_DentriticCells | 138.3 | ![]() |
Bonemarrow | 16.3 | ![]() |
BronchialEpithelialCells | 32.05 | ![]() |
CD105+_Endothelial | 54 | ![]() |
CD14+_Monocytes | 362.15 | ![]() |
CD19+_BCells(neg._sel.) | 197.15 | ![]() |
CD33+_Myeloid | 546.55 | ![]() |
CD34+ | 97.3 | ![]() |
CD4+_Tcells | 145.35 | ![]() |
CD56+_NKCells | 135.75 | ![]() |
CD71+_EarlyErythroid | 7.6 | ![]() |
CD8+_Tcells | 155.75 | ![]() |
CardiacMyocytes | 8.3 | ![]() |
Caudatenucleus | 5.4 | ![]() |
Cerebellum | 5.15 | ![]() |
CerebellumPeduncles | 6.9 | ![]() |
CiliaryGanglion | 4.3 | ![]() |
CingulateCortex | 6.45 | ![]() |
Colorectaladenocarcinoma | 6.8 | ![]() |
DorsalRootGanglion | 4.7 | ![]() |
FetalThyroid | 6.45 | ![]() |
Fetalbrain | 8.95 | ![]() |
Fetalliver | 5.65 | ![]() |
Fetallung | 30.75 | ![]() |
GlobusPallidus | 4.15 | ![]() |
Heart | 7.3 | ![]() |
Hypothalamus | 6.7 | ![]() |
Kidney | 4.9 | ![]() |
Leukemia_chronicMyelogenousK-562 | 6.9 | ![]() |
Leukemia_promyelocytic-HL-60 | 22.55 | ![]() |
Leukemialymphoblastic(MOLT-4) | 23.4 | ![]() |
Liver | 7.6 | ![]() |
Lung | 11.85 | ![]() |
Lymphnode | 39.45 | ![]() |
Lymphoma_burkitts(Daudi) | 18.9 | ![]() |
Lymphoma_burkitts(Raji) | 43.85 | ![]() |
MedullaOblongata | 5.3 | ![]() |
OccipitalLobe | 5.2 | ![]() |
OlfactoryBulb | 5.05 | ![]() |
Ovary | 4.55 | ![]() |
Pancreas | 16.15 | ![]() |
PancreaticIslet | 19.4 | ![]() |
ParietalLobe | 6.05 | ![]() |
Pituitary | 6.75 | ![]() |
Placenta | 9.9 | ![]() |
Pons | 5.45 | ![]() |
PrefrontalCortex | 7.45 | ![]() |
Prostate | 19.1 | ![]() |
Salivarygland | 11.8 | ![]() |
SkeletalMuscle | 6.6 | ![]() |
Skin | 5.25 | ![]() |
SmoothMuscle | 8.55 | ![]() |
Spinalcord | 6.65 | ![]() |
SubthalamicNucleus | 5.1 | ![]() |
SuperiorCervicalGanglion | 7.2 | ![]() |
TemporalLobe | 5.25 | ![]() |
Testis | 11.35 | ![]() |
TestisGermCell | 5.95 | ![]() |
TestisIntersitial | 5.8 | ![]() |
TestisLeydigCell | 6.5 | ![]() |
TestisSeminiferousTubule | 6.15 | ![]() |
Thalamus | 6.2 | ![]() |
Thymus | 11.35 | ![]() |
Thyroid | 10.4 | ![]() |
Tongue | 6.6 | ![]() |
Tonsil | 10.2 | ![]() |
Trachea | 6.75 | ![]() |
TrigeminalGanglion | 5.95 | ![]() |
Uterus | 16.1 | ![]() |
UterusCorpus | 5.6 | ![]() |
WholeBlood | 245.1 | ![]() |
Wholebrain | 4.9 | ![]() |
colon | 73.35 | ![]() |
pineal_day | 7.68 | ![]() |
pineal_night | 7.38 | ![]() |
retina | 10.75 | ![]() |
small_intestine | 56.75 | ![]() |
- Probe name: A_32_P3602
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 5.23 ± 0.26 | ![]() ![]() ![]() |
Basal Forebrain | 5.4 ± 0.53 | ![]() ![]() ![]() |
Basal Part of Pons | 4.92 ± 0.44 | ![]() ![]() ![]() |
Cerebellar Cortex | 5.66 ± 0.37 | ![]() ![]() ![]() |
Cerebellar Nuclei | 4.98 ± 0.35 | ![]() ![]() ![]() |
Claustrum | 4.48 ± 0.66 | ![]() ![]() ![]() |
Epithalamus | 5.06 ± 0.5 | ![]() ![]() ![]() |
Frontal Lobe | 4.79 ± 0.43 | ![]() ![]() ![]() |
Globus Pallidus | 5.66 ± 0.91 | ![]() ![]() ![]() |
Hypothalamus | 4.9 ± 0.58 | ![]() ![]() ![]() |
Insula | 4.82 ± 0.33 | ![]() ![]() ![]() |
Limbic Lobe | 4.87 ± 0.48 | ![]() ![]() ![]() |
Mesencephalon | 4.95 ± 0.58 | ![]() ![]() ![]() |
Myelencephalon | 5.02 ± 0.54 | ![]() ![]() ![]() |
Occipital Lobe | 5.41 ± 0.56 | ![]() ![]() ![]() |
Parietal Lobe | 4.92 ± 0.47 | ![]() ![]() ![]() |
Pontine Tegmentum | 5.08 ± 0.61 | ![]() ![]() ![]() |
Striatum | 5.33 ± 0.84 | ![]() ![]() ![]() |
Subthalamus | 4.58 ± 0.45 | ![]() ![]() ![]() |
Temporal Lobe | 4.83 ± 0.42 | ![]() ![]() ![]() |
Thalamus | 5.14 ± 0.49 | ![]() ![]() ![]() |
White Matter | 5.6 ± 0.28 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Usp3 | CB | Cerebellum | 100 | ![]() |
100 | ![]() | |||
Usp3 | CTX | Cerebral cortex | 73.64 | ![]() |
54.35 | ![]() | |||
Usp3 | HIP | Hippocampal region | 52.53 | ![]() |
75.56 | ![]() | |||
Usp3 | HPF | Hippocampal formation | 69.37 | ![]() |
78.42 | ![]() | |||
Usp3 | HY | Hypothalamus | 7.35 | ![]() |
5.12 | ![]() | |||
Usp3 | LSX | Lateral septal complex | 32.66 | ![]() |
26.53 | ![]() | |||
Usp3 | MB | Midbrain | 6.66 | ![]() |
5.66 | ![]() | |||
Usp3 | MY | Medulla | 11.24 | ![]() |
11.91 | ![]() | |||
Usp3 | OLF | Olfactory bulb | 81.52 | ![]() |
70.33 | ![]() | |||
Usp3 | P | Pons | 13.61 | ![]() |
13.45 | ![]() | |||
Usp3 | PAL | Pallidum | 18.96 | ![]() |
15.37 | ![]() | |||
Usp3 | RHP | Retrohippocampal region | 94.52 | ![]() |
82.81 | ![]() | |||
Usp3 | sAMY | Striatum-like amygdalar nuclei | 31.65 | ![]() |
22.47 | ![]() | |||
Usp3 | STR | Striatum | 100 | ![]() |
88.75 | ![]() | |||
Usp3 | STRd | Striatum dorsal region | 100 | ![]() |
100 | ![]() | |||
Usp3 | STRv | Striatum ventral region | 100 | ![]() |
85.35 | ![]() | |||
Usp3 | TH | Thalamus | 17.36 | ![]() |
13.58 | ![]() |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00042497 | 18 | 370 | 387 | SFTDLEELDETELYMCHK | Peptide Atlas |
UBP3_HUMAN_197 | 8 | 197 | 204 | NGKTAGRR | PRIDE |
UBP3_HUMAN_210 | 14 | 210 | 223 | SQGDNNVSLVEEFR | PRIDE |