AutismKB 2.0

Annotation Detail for CLEC2B


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Basic Information Top
Gene Symbol:CLEC2B ( AICL,CLECSF2,HP10085,IFNRG1 )
Gene Full Name: C-type lectin domain family 2, member B
Band: 12p13.31
Quick LinksEntrez ID:9976; OMIM: 603242; Uniprot ID:CLC2B_HUMAN; ENSEMBL ID: ENSG00000110852; HGNC ID: 2053
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus12 / 56401221
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult73 / 193912137
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma6 / 17475343
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor6 / 26384522
glioma0 / 1068830 
head and neck tumor6 / 13630244
kidney tumor3 / 6895943
leukemia4 / 9584241
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal92 / 336030727
ovarian tumor3 / 7668239
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites0 / 400150 
bladder5 / 29757168
blood6 / 12347848
bone1 / 7165513
bone marrow11 / 48801225
brain3 / 11009892
cervix0 / 481710 
connective tissue10 / 14925566
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye5 / 21105423
heart2 / 8962622
intestine2 / 2344728
kidney12 / 21177756
larynx2 / 2414582
liver4 / 20774319
lung7 / 33697420
lymph0 / 442700 
lymph node3 / 9161032
mammary gland2 / 15327113
mouth3 / 6705244
muscle4 / 10771537
nerve2 / 15768126
ovary5 / 10205148
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta6 / 28082521
prostate6 / 18934531
salivary gland0 / 201550 
skin1 / 2105744
spleen1 / 5395218
stomach9 / 9661993
testis8 / 33044224
thymus9 / 81131110
thyroid1 / 4747321
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord0 / 136800 
uterus10 / 23287842
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209732_at
Cell line Expression level Expression bar
721_B_lymphoblasts12.05
Adipocyte175.1
AdrenalCortex22.35
Adrenalgland12.95
Amygdala10.45
Appendix160.95
AtrioventricularNode24.25
BDCA4+_DentriticCells349.85
Bonemarrow27.15
BronchialEpithelialCells18.15
CD105+_Endothelial26.6
CD14+_Monocytes428.6
CD19+_BCells(neg._sel.)289.65
CD33+_Myeloid239.05
CD34+112.25
CD4+_Tcells572.95
CD56+_NKCells675.45
CD71+_EarlyErythroid11.4
CD8+_Tcells567.4
CardiacMyocytes26.9
Caudatenucleus15.95
Cerebellum10.6
CerebellumPeduncles17.3
CiliaryGanglion67.15
CingulateCortex14.7
Colorectaladenocarcinoma11.45
DorsalRootGanglion25.15
FetalThyroid24.85
Fetalbrain11.35
Fetalliver14.4
Fetallung95.1
GlobusPallidus10.5
Heart28.15
Hypothalamus18.6
Kidney12.95
Leukemia_chronicMyelogenousK-56270.25
Leukemia_promyelocytic-HL-6069.8
Leukemialymphoblastic(MOLT-4)87.25
Liver19.1
Lung11.05
Lymphnode107.7
Lymphoma_burkitts(Daudi)28.1
Lymphoma_burkitts(Raji)232.15
MedullaOblongata17.75
OccipitalLobe11.05
OlfactoryBulb44.3
Ovary125.35
Pancreas17.15
PancreaticIslet27.6
ParietalLobe15.65
Pituitary20.9
Placenta12.6
Pons21.25
PrefrontalCortex13.4
Prostate12.95
Salivarygland53
SkeletalMuscle96.8
Skin117.65
SmoothMuscle24.25
Spinalcord16.9
SubthalamicNucleus27.1
SuperiorCervicalGanglion42.15
TemporalLobe33.65
Testis8.75
TestisGermCell10.1
TestisIntersitial15
TestisLeydigCell16.7
TestisSeminiferousTubule20.3
Thalamus16.35
Thymus8.85
Thyroid18.9
Tongue88.25
Tonsil64.25
Trachea25.85
TrigeminalGanglion38.1
Uterus62.15
UterusCorpus148.35
WholeBlood1236.55
Wholebrain8.1
colon18.3
pineal_day16.7
pineal_night16.4
retina20.925
small_intestine16.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P201702
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.92 ± 0.62
Basal Forebrain3.7 ± 0.37
Basal Part of Pons3.87 ± 0.36
Cerebellar Cortex4.04 ± 0.51
Cerebellar Nuclei5.11 ± 0.59
Claustrum3.82 ± 0.55
Epithalamus4.51 ± 0.75
Frontal Lobe4.09 ± 0.6
Globus Pallidus5.28 ± 0.3
Hypothalamus3.94 ± 0.8
Insula4.03 ± 0.54
Limbic Lobe3.97 ± 0.61
Mesencephalon4.22 ± 0.72
Myelencephalon4.2 ± 0.66
Occipital Lobe4.4 ± 0.69
Parietal Lobe3.87 ± 0.61
Pontine Tegmentum4.31 ± 0.66
Striatum4.83 ± 0.56
Subthalamus4.59 ± 0.51
Temporal Lobe3.81 ± 0.62
Thalamus4.1 ± 0.57
White Matter4.59 ± 0.88
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00010299 17 119 135 GSEGCAYLSDDGAATAR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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