AutismKB 2.0

Annotation Detail for CDH3


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:CDH3 ( CDHP,HJMD,PCAD )
Gene Full Name: cadherin 3, type 1, P-cadherin (placental)
Band: 16q22.1
Quick LinksEntrez ID:1001; OMIM: 114021; Uniprot ID:CADH3_HUMAN; ENSEMBL ID: ENSG00000062038; HGNC ID: 1762
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
200N-linked (GlcNAc...) (Potential).
566N-linked (GlcNAc...) (Potential).
713Phosphotyrosine.
Location(AA) Modifications Resource
200N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
566N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
17S-palmitoylHMM predict
233O-linkedHMM predict
276Phosphothreonine(PKA)HMM predict
280Phosphoserine(CAMK2)HMM predict
391Phosphothreonine(PKC)HMM predict
500Phosphothreonine(PKC)HMM predict
514Phosphotyrosine(INSR)HMM predict
514Phosphotyrosine(SRC)HMM predict
523N-linkedHMM predict
525O-linkedHMM predict
525Phosphoserine(IKK)HMM predict
529O-linkedHMM predict
557N-linkedHMM predict
566N-linkedHMM predict
622Phosphoserine(CK1)HMM predict
713Phosphotyrosine(Syk)HMM predict
713SulfotyrosineHMM predict
770O-linkedHMM predict
785Phosphoserine(CK2)HMM predict
787Phosphoserine(ATM)HMM predict
791Phosphoserine(IKK)HMM predict
791Phosphoserine(CK1)HMM predict
794Phosphoserine(CK1)HMM predict
794Phosphoserine(IKK)HMM predict
796O-linkedHMM predict
800Phosphoserine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001793
  • Location:chr16 67236276-67290441
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FoxA1 MCF7MACSdata 67227454 67227609 155 8745
H3K27me3 colorectalcancer 67235222 67235630 408 851
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 67295833 67296000 167 5475
CTCF CD4SISSRdata 67295833 67296000 167 5475
CTCF HelaGSE12889 67295708 67296028 320 5427
CTCF JurkatGSE12889 67295803 67296081 278 5501
CTCF G2GSE9613 67295751 67296098 347 5483
ER Breast-CancerGSE22609 67299108 67299771 663 8998
ER MCF7GSE19013 67299030 67299945 915 9046
NRSF pAbJurkat 67297760 67297907 147 7392
STAT1 IFNSISSRdata 67295680 67296201 521 5499
hScc1 BcellGSE12603 67295751 67296098 347 5483
hScc1 BcellGSE12603 67296585 67296794 209 6248
hScc1 CdLSGSE12603 67295751 67296098 347 5483
hScc1 G2GSE9613 67295751 67296098 347 5483
p63 keratinocytesGSE17611 67298423 67299488 1065 8514
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 67287217 67287360 143 0
FOXA1 MCF7GSE15244 67260676 67261197 521 0
FOXA1 MCF7GSE15244 67287989 67288348 359 0
Rb shRbQuiescentGSE19898 67257103 67257378 275 0
Stat6 IL-4-hr4GSE17850 67238894 67239454 560 0
TFAP2C MCF7GSE21234 67236069 67236771 702 0
TFAP2C MCF7GSE21234 67237552 67237911 359 0
TFAP2C MCF7GSE21234 67249425 67250767 1342 0
TFAP2C MCF7GSE21234 67259710 67260140 430 0
hScc1 BcellGSE12603 67270163 67270364 201 0
p63 keratinocytesGSE17611 67249506 67250527 1021 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-100 hsa-mir-100 11 20421599
hsa-miR-100* hsa-mir-100 11 20421599
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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