AutismKB 2.0

Annotation Detail for PDCD6


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Basic Information Top
Gene Symbol:PDCD6 ( ALG-2,FLJ46208,MGC111017,MGC119050,MGC9123,PEF1B )
Gene Full Name: programmed cell death 6
Band: 5p15.33
Quick LinksEntrez ID:10016; OMIM: 601057; Uniprot ID:PDCD6_HUMAN; ENSEMBL ID: ENSG00000063438,ENSG00000249915; HGNC ID: 8765
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_013232
  • Location:chr5 324735-368088
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 317544 317719 175 7104
Fos K562GSE19551 324166 325021 855 142
Myc K562GSE19551 324175 325082 907 107
Myc hESGSE17917 324460 324747 287 132
Nanog hESGSE18292 324456 324718 262 149
PHF8 293TGSE20725 323794 325076 1282 301
PHF8 HeLaGSE20725 323939 325483 1544 25
PHF8 Hs68plusFBSGSE20725 323843 325157 1314 236
TAFII hESGSE17917 324482 324917 435 36
TFAP2C MCF7GSE21234 324158 324912 754 201
p130 QuiescentGSE19898 324419 324841 422 106
p130 SenescentGSE19898 324400 324807 407 132
p130 shRbSenescentGSE19898 324441 324798 357 116
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 354230 356718 2488 0
CTCF G2GSE9613 324465 326496 2031 0
CTCF G2GSE9613 333244 333893 649 0
CTCF G2GSE9613 334442 334682 240 0
CTCF G2GSE9613 343390 343715 325 0
CTCF G2GSE9613 345874 347121 1247 0
CTCF G2GSE9613 349338 349685 347 0
CTCF G2GSE9613 351421 352344 923 0
CTCF G2GSE9613 358119 358709 590 0
CTCF G2GSE9613 362019 362261 242 0
CTCF G2GSE9613 362684 362919 235 0
CTCF G2GSE9613 365142 365313 171 0
ER MCF7GSE19013 354543 356109 1566 0
ETS1 JurkatGSE17954 324113 325677 1564 0
GABP k562GSE8489 325374 326496 1122 0
H3K4me2 HCT116GSE10453 325374 327103 1729 0
H3K4me3 colorectalcancer 325417 326311 894 0
H3ac HepG2E 325270 328162 2892 0
TAF HelaGSE8489 325374 326421 1047 0
TAF HelaGSE8489 333933 334584 651 0
TAF k562GSE8489 325298 327429 2131 0
TFAP2C MCF7GSE21234 328704 329244 540 0
hScc1 BcellGSE12603 324426 325374 948 0
hScc1 BcellGSE12603 344347 344523 176 0
hScc1 BcellGSE12603 362717 363162 445 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 18719242
hsa-let-7a hsa-let-7a-2 11 18719242
hsa-let-7a hsa-let-7a-3 22 18719242
hsa-let-7a hsa-let-7a-1 9 18367718
hsa-let-7a hsa-let-7a-2 11 18367718
hsa-let-7a hsa-let-7a-3 22 18367718
hsa-let-7a hsa-let-7a-1 9 15024405
hsa-let-7a hsa-let-7a-2 11 15024405
hsa-let-7a hsa-let-7a-3 22 15024405
hsa-let-7a* hsa-let-7a-1 9 18719242
hsa-let-7a* hsa-let-7a-3 22 18719242
hsa-let-7a* hsa-let-7a-1 9 18367718
hsa-let-7a* hsa-let-7a-3 22 18367718
hsa-let-7a* hsa-let-7a-1 9 15024405
hsa-let-7a* hsa-let-7a-3 22 15024405
hsa-let-7b hsa-let-7b 22 18719242
hsa-let-7b hsa-let-7b 22 18367718
hsa-let-7b hsa-let-7b 22 15024405
hsa-let-7b* hsa-let-7b 22 18719242
hsa-let-7b* hsa-let-7b 22 18367718
hsa-let-7b* hsa-let-7b 22 15024405
hsa-let-7c hsa-let-7c 21 18719242
hsa-let-7c hsa-let-7c 21 18367718
hsa-let-7c hsa-let-7c 21 15024405
hsa-let-7c* hsa-let-7c 21 18719242
hsa-let-7c* hsa-let-7c 21 18367718
hsa-let-7c* hsa-let-7c 21 15024405
hsa-let-7d hsa-let-7d 9 18719242
hsa-let-7d hsa-let-7d 9 18367718
hsa-let-7d hsa-let-7d 9 15024405
hsa-let-7d* hsa-let-7d 9 18719242
hsa-let-7d* hsa-let-7d 9 18367718
hsa-let-7d* hsa-let-7d 9 15024405
hsa-let-7e hsa-let-7e 19 18719242
hsa-let-7e hsa-let-7e 19 18367718
hsa-let-7e hsa-let-7e 19 15024405
hsa-let-7e* hsa-let-7e 19 18719242
hsa-let-7e* hsa-let-7e 19 18367718
hsa-let-7e* hsa-let-7e 19 15024405
hsa-let-7f hsa-let-7f-1 9 18719242
hsa-let-7f hsa-let-7f-2 X 18719242
hsa-let-7f hsa-let-7f-1 9 18367718
hsa-let-7f hsa-let-7f-2 X 18367718
hsa-let-7f hsa-let-7f-1 9 15024405
hsa-let-7f hsa-let-7f-2 X 15024405
hsa-let-7f-1* hsa-let-7f-1 9 18719242
hsa-let-7f-1* hsa-let-7f-1 9 18367718
hsa-let-7f-1* hsa-let-7f-1 9 15024405
hsa-let-7f-2* hsa-let-7f-2 X 18719242
hsa-let-7f-2* hsa-let-7f-2 X 18367718
hsa-let-7f-2* hsa-let-7f-2 X 15024405
hsa-let-7g hsa-let-7g 3 18719242
hsa-let-7g hsa-let-7g 3 18367718
hsa-let-7g hsa-let-7g 3 15024405
hsa-let-7g* hsa-let-7g 3 18719242
hsa-let-7g* hsa-let-7g 3 18367718
hsa-let-7g* hsa-let-7g 3 15024405
hsa-let-7i hsa-let-7i 12 18719242
hsa-let-7i hsa-let-7i 12 18367718
hsa-let-7i hsa-let-7i 12 15024405
hsa-let-7i* hsa-let-7i 12 18719242
hsa-let-7i* hsa-let-7i 12 18367718
hsa-let-7i* hsa-let-7i 12 15024405
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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