AutismKB 2.0

Annotation Detail for CDH6


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:CDH6 ( KCAD )
Gene Full Name: cadherin 6, type 2, K-cadherin (fetal kidney)
Band: 5p13.3
Quick LinksEntrez ID:1004; OMIM: 603007; Uniprot ID:CADH6_HUMAN; ENSEMBL ID: ENSG00000113361; HGNC ID: 1765
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
49N-linked (GlcNAc...) (Potential).
255N-linked (GlcNAc...) (Potential).
399N-linked (GlcNAc...).
437N-linked (GlcNAc...) (Potential).
455N-linked (GlcNAc...) (Potential).
536N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
49N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
255N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
399N-linked (GlcNAc...).Swiss-Prot 53.0
437N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
455N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
536N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
19O-linkedHMM predict
22Phosphothreonine(MAPK)HMM predict
22Phosphothreonine(CDK)HMM predict
49N-linkedHMM predict
184O-linkedHMM predict
191Phosphotyrosine(INSR)HMM predict
209Phosphoserine(ATM)HMM predict
255N-linkedHMM predict
277O-linkedHMM predict
281O-linkedHMM predict
285Phosphothreonine(CDC2)HMM predict
353Phosphotyrosine(Abl)HMM predict
353Phosphotyrosine(Jak)HMM predict
369Phosphothreonine(PKC)HMM predict
399N-linkedHMM predict
400O-linkedHMM predict
437N-linkedHMM predict
442Phosphothreonine(CK2)HMM predict
455N-linkedHMM predict
536N-linkedHMM predict
542N-linkedHMM predict
556Phosphotyrosine(EGFR)HMM predict
575Phosphotyrosine(Syk)HMM predict
580O-linkedHMM predict
703Phosphothreonine(MAPK)HMM predict
705PhosphothreonineHMM predict
723N-linkedHMM predict
745Phosphoserine(IKK)HMM predict
745Phosphoserine(CK2)HMM predict
749Phosphoserine(IKK)HMM predict
751Phosphoserine(CK1)HMM predict
752Phosphoserine(CK1)HMM predict
755Phosphoserine(CK1)HMM predict
764Phosphotyrosine(Syk)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004932
  • Location:chr5 31229552-31360993
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 31222579 31222826 247 6850
CTCF CD4SISSRdata 31222579 31222826 247 6850
CTCF G2GSE9613 31222483 31223015 532 6804
H3K27me3 colorectalcancer 31228201 31229639 1438 633
Oct1 H2O2-HelaGSE14283 31227565 31227600 35 1970
Oct1 HelaGSE14283 31219562 31219590 28 9977
Oct1 HelaGSE14283 31227546 31227603 57 1978
hScc1 G2GSE9613 31222483 31222979 496 6822
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 HelaGSE14283 31364371 31364414 43 3399
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF HelaGSE12889 31327438 31327635 197 0
CTCF G2GSE9613 31232221 31232359 138 0
CTCF G2GSE9613 31268003 31268665 662 0
CTCF G2GSE9613 31272987 31273365 378 0
CTCF G2GSE9613 31286005 31287173 1168 0
ER E2-MCF7GSE14664 31354474 31354568 94 0
ER Fulvestrant-MCF7GSE14664 31277940 31277983 43 0
ER Fulvestrant-MCF7GSE14664 31341226 31341265 39 0
H3K27me3 colorectalcancer 31230200 31231657 1457 0
Oct1 H2O2-HelaGSE14283 31276073 31276125 52 0
Oct1 H2O2-HelaGSE14283 31322381 31322409 28 0
Oct1 H2O2-HelaGSE14283 31326891 31326928 37 0
Oct1 H2O2-HelaGSE14283 31326993 31327027 34 0
Oct1 H2O2-HelaGSE14283 31330409 31330446 37 0
Oct1 H2O2-HelaGSE14283 31356210 31356245 35 0
Oct1 HelaGSE14283 31239268 31239301 33 0
Oct1 HelaGSE14283 31253043 31253075 32 0
Oct1 HelaGSE14283 31271035 31271069 34 0
Oct1 HelaGSE14283 31276073 31276125 52 0
Oct1 HelaGSE14283 31326886 31326926 40 0
Oct1 HelaGSE14283 31326990 31327035 45 0
Oct1 HelaGSE14283 31330409 31330449 40 0
Oct1 HelaGSE14283 31341228 31341265 37 0
Oct1 HelaGSE14283 31341907 31341949 42 0
Oct1 HelaGSE14283 31356210 31356244 34 0
Stat6 IL-4-hr4GSE17850 31272373 31272958 585 0
hScc1 BcellGSE12603 31268108 31268381 273 0
hScc1 CdLSGSE12603 31268038 31268665 627 0
hScc1 G2GSE9613 31267785 31268665 880 0
hScc1 G2GSE9613 31272952 31273400 448 0
hScc1 G2GSE9613 31286481 31287274 793 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
20797 mRNA CDH6 chr5 31229552 31360994 1301 mRNA chr5 31247317 31248618 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved