AutismKB 2.0

Annotation Detail for TOM1


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Basic Information Top
Gene Symbol:TOM1 ( FLJ33404 )
Gene Full Name: target of myb1 (chicken)
Band: 22q12.3
Quick LinksEntrez ID:10043; OMIM: 604700; Uniprot ID:TOM1_HUMAN; ENSEMBL ID: ENSG00000100284; HGNC ID: 11982
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
1N-acetylmethionine.
130Phosphoserine.
131Phosphoserine.
139Phosphothreonine.
160Phosphoserine.
164Phosphothreonine.
174Phosphothreonine (By similarity).
176Phosphoserine (By similarity).
180Phosphoserine (By similarity).
355Phosphoserine.
386Phosphotyrosine.
461Phosphoserine.
462Phosphoserine.
464Phosphoserine.
Location(AA) Modifications Resource
174Phosphothreonine (By similarity).Swiss-Prot 53.0
176Phosphoserine (By similarity).Swiss-Prot 53.0
180Phosphoserine (By similarity).Swiss-Prot 53.0
462Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
11Phosphoserine(CDK)HMM predict
11Phosphoserine(CDC2)HMM predict
41N-linkedHMM predict
164Phosphothreonine(MAPK)HMM predict
164Phosphothreonine(CDC2)HMM predict
164Phosphothreonine(CDK)HMM predict
176Phosphoserine(IKK)HMM predict
186Phosphoserine(ATM)HMM predict
258N-linkedHMM predict
337Phosphoserine(ATM)HMM predict
347Phosphoserine(CDC2)HMM predict
376Phosphoserine(PKB)HMM predict
459N-linkedHMM predict
462Phosphoserine(CDC2)HMM predict
464O-linkedHMM predict
473Phosphoserine(IKK)HMM predict
473O-linkedHMM predict
481Phosphothreonine(PKA)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005488
  • Location:chr22 34025860-34073972
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
RARA MCF7GSE15244 34024733 34025580 847 704
USF1 HepG2E 34024840 34026686 1846 98
USF2 HepG2E 34024878 34026442 1564 201
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 34089988 34090870 882 16457
CTCF CD4GSE12889 34076805 34077157 352 3009
CTCF CD4SISSRdata 34076805 34077157 352 3009
CTCF G2GSE9613 34076502 34077010 508 2784
CTCF G2GSE9613 34078631 34079066 435 4876
ER Breast-CancerGSE22609 34078608 34079169 561 4916
ER Breast-CancerGSE22609 34085598 34086082 484 11868
P300 T30-glioblastomaGSE21026 34089997 34090728 731 16390
Rb SenescentGSE19898 34076769 34077111 342 2968
VDR GM10861-stimGSE22484 34076250 34077579 1329 2942
hScc1 BcellGSE12603 34076502 34077287 785 2922
hScc1 CdLSGSE12603 34076566 34077287 721 2954
p130 shRbQuiescentGSE19898 34090248 34090726 478 16515
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 34026965 34028324 1359 0
CBP T30-glioblastomaGSE21026 34038993 34040315 1322 0
ER MCF7GSE19013 34039291 34039826 535 0
FOXA1 MCF7GSE15244 34036662 34037249 587 0
Fos K562GSE19551 34025570 34026834 1264 0
H3ac HepG2E 34027332 34027556 224 0
H3ac HepG2E 34028784 34029301 517 0
H3ac HepG2E 34036595 34037178 583 0
Oct4 hESGSE17917 34025687 34026152 465 0
P300 T30-glioblastomaGSE21026 34038982 34040364 1382 0
RARA MCF7GSE15244 34036595 34037249 654 0
RARA MCF7GSE15244 34038263 34039038 775 0
RARG MCF7GSE15244 34038263 34039038 775 0
TAF k562GSE8489 34027332 34027628 296 0
TFAP2C MCF7GSE21234 34041307 34041810 503 0
USF1 HepG2E 34027332 34027556 224 0
hScc1 BcellGSE12603 34025942 34026651 709 0
hScc1 BcellGSE12603 34054323 34054785 462 0
hScc1 BcellGSE12603 34056302 34056600 298 0
hScc1 BcellGSE12603 34063886 34064320 434 0
hScc1 BcellGSE12603 34066769 34067047 278 0
hScc1 CdLSGSE12603 34063818 34064320 502 0
p130 shRbQuiescentGSE19898 34026294 34026756 462 0
p130 shRbSenescentGSE19898 34025770 34026225 455 0
p130 shRbSenescentGSE19898 34026236 34026392 156 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-126 hsa-mir-126 9 20083669
hsa-miR-126 hsa-mir-126 9 18834857
hsa-miR-126* hsa-mir-126 9 20083669
hsa-miR-126* hsa-mir-126 9 18834857
hsa-miR-34a hsa-mir-34a 1 18834857
hsa-miR-34a* hsa-mir-34a 1 18834857
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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