AutismKB 2.0

Annotation Detail for GPC6


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Basic Information Top
Gene Symbol:GPC6 ( MGC126288,OMIMD1 )
Gene Full Name: glypican 6
Band: 13q31.3-q32.1
Quick LinksEntrez ID:10082; OMIM: 604404; Uniprot ID:GPC6_HUMAN; ENSEMBL ID: ENSG00000183098; HGNC ID: 4454
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
76Phosphoserine(ATM)HMM predict
132Phosphotyrosine(INSR)HMM predict
236O-linkedHMM predict
239Phosphoserine(CDC2)HMM predict
254S-palmitoylHMM predict
334Phosphoserine(PKG)HMM predict
417Phosphoserine(CK2)HMM predict
489Phosphoserine(CK2)HMM predict
493Phosphoserine(IKK)HMM predict
493Phosphoserine(CK1)HMM predict
495Phosphoserine(CK2)HMM predict
495Phosphoserine(CK1)HMM predict
495Phosphoserine(IKK)HMM predict
497Phosphoserine(IKK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005708
  • Location:chr13 92677095-93853947
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
p63 keratinocytesGSE17611 92667594 92668504 910 9047
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 93866694 93867114 420 12957
ER Fulvestrant-MCF7GSE14664 93859944 93859985 41 6017
Oct4 hESGSE17917 93866763 93867018 255 12943
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 93795730 93795996 266 0
CTCF CD4GSE12889 93812666 93812977 311 0
CTCF CD4SISSRdata 93795730 93795996 266 0
CTCF CD4SISSRdata 93812666 93812977 311 0
CTCF HelaGSE12889 93812737 93813001 264 0
CTCF JurkatGSE12889 92698910 92699149 239 0
CTCF G2GSE9613 92677143 92677419 276 0
CTCF G2GSE9613 92677851 92678134 283 0
CTCF G2GSE9613 92678585 92678835 250 0
CTCF G2GSE9613 92685593 92685864 271 0
CTCF G2GSE9613 93642811 93643197 386 0
CTCF G2GSE9613 93792912 93793153 241 0
CTCF G2GSE9613 93802317 93802548 231 0
CTCF G2GSE9613 93812632 93813029 397 0
CTCF G2GSE9613 93833416 93833593 177 0
ER Breast-CancerGSE22609 92684103 92684936 833 0
ER E2-MCF7GSE14664 93532309 93532341 32 0
ER Fulvestrant-MCF7GSE14664 93570734 93570775 41 0
ER MCF7GSE19013 92684189 92684724 535 0
Fos K562GSE19551 92740702 92741533 831 0
FoxA1 MCF7MACSdata 92776776 92776951 175 0
FoxA1 MCF7MACSdata 93413878 93414143 265 0
GABP HelaGSE8489 93556008 93556607 599 0
H3ac HepG2E 92676623 92677816 1193 0
H3ac HepG2E 92678762 92679543 781 0
H3ac HepG2E 92680020 92680379 359 0
Jun K562GSE19551 93812738 93813031 293 0
KLF4 hESGSE17917 93124853 93125075 222 0
NRSF JurkatGSE13047 93140093 93141193 1100 0
NRSF JurkatGSE13047 93731078 93731426 348 0
NRSF JurkatGSE13047 93735433 93735888 455 0
NRSF JurkatSISSRdata 93140487 93140704 217 0
NRSF mAbJurkat 93137523 93138585 1062 0
NRSF mAbJurkat 93139214 93142614 3400 0
NRSF mAbJurkat 93730510 93731389 879 0
NRSF mAbJurkat 93731739 93732284 545 0
NRSF-mono JurkatQuESTdata 93140005 93141283 1278 0
NRSF-mono JurkatQuESTdata 93731107 93731419 312 0
NRSF-mono JurkatQuESTdata 93735432 93735755 323 0
NRSF-mono JurkatQuESTdata 93792989 93793202 213 0
NRSF-poly JurkatQuESTdata 93140278 93140898 620 0
NRSF-poly JurkatQuESTdata 93731078 93731550 472 0
Nanog ESGSE20650 92777590 92778024 434 0
Nanog ESGSE20650 93078361 93078817 456 0
Nanog ESGSE20650 93435039 93435529 490 0
Nanog ESGSE20650 93699825 93700275 450 0
Nanog ESGSE20650 93754130 93754547 417 0
Nanog ESGSE20650 93794441 93794755 314 0
Nanog ESGSE20650 93822688 93822870 182 0
Nanog hESGSE18292 92788329 92788603 274 0
Nanog hESGSE18292 92975173 92975586 413 0
Nanog hESGSE18292 93257021 93257663 642 0
Nanog hESGSE18292 93434911 93435437 526 0
Oct1 H2O2-HelaGSE14283 93221051 93221081 30 0
Oct1 H2O2-HelaGSE14283 93222859 93222885 26 0
Oct1 H2O2-HelaGSE14283 93234830 93234870 40 0
Oct1 H2O2-HelaGSE14283 93510694 93510741 47 0
Oct1 HelaGSE14283 93178298 93178344 46 0
Oct1 HelaGSE14283 93221038 93221084 46 0
Oct1 HelaGSE14283 93222856 93222888 32 0
Oct1 HelaGSE14283 93234835 93234871 36 0
Oct1 HelaGSE14283 93338396 93338425 29 0
Oct1 HelaGSE14283 93510694 93510741 47 0
Oct1 HelaGSE14283 93532299 93532346 47 0
Oct1 HelaGSE14283 93533188 93533215 27 0
Oct1 HelaGSE14283 93544386 93544423 37 0
Oct1 HelaGSE14283 93544576 93544608 32 0
Oct1 HelaGSE14283 93553417 93553467 50 0
Oct1 HelaGSE14283 93570694 93570764 70 0
Oct1 HelaGSE14283 93633076 93633120 44 0
Oct1 HelaGSE14283 93780878 93780907 29 0
Oct1 HelaGSE14283 93793129 93793157 28 0
Oct1 HelaGSE14283 93796766 93796812 46 0
Oct4 hESGSE17917 93594279 93594555 276 0
Oct4 hESGSE17917 93762689 93763114 425 0
Oct4 hESGSE17917 93812758 93813017 259 0
P300 T0-glioblastomaGSE21026 93779582 93780658 1076 0
P300 T30-glioblastomaGSE21026 92699577 92700263 686 0
P300 T30-glioblastomaGSE21026 93689160 93690038 878 0
P300 T30-glioblastomaGSE21026 93699706 93700369 663 0
P300 T30-glioblastomaGSE21026 93779666 93780764 1098 0
PAX3-FKHR Rh4GSE19063 92900624 92901627 1003 0
RNAII Tamoxifen-MCF7GSE14664 93510699 93510741 42 0
Rb GrowingGSE19898 92856966 92857081 115 0
SRF k562GSE8489 92833186 92833438 252 0
Stat6 IL-4-hr1GSE17850 93078194 93078787 593 0
TAF k562GSE8489 92804047 92804573 526 0
TFAP2C MCF7GSE21234 92806594 92807092 498 0
USF1 HepG2E 92881592 92881835 243 0
USF2 HepG2E 93569553 93569980 427 0
hScc1 BcellGSE12603 93623773 93623987 214 0
hScc1 BcellGSE12603 93812498 93813096 598 0
hScc1 CdLSGSE12603 92684653 92684838 185 0
hScc1 CdLSGSE12603 92698778 92699324 546 0
hScc1 CdLSGSE12603 93296296 93296704 408 0
hScc1 CdLSGSE12603 93642729 93643291 562 0
hScc1 CdLSGSE12603 93812498 93813096 598 0
hScc1 G2GSE9613 93642729 93643164 435 0
hScc1 G2GSE9613 93812417 93813060 643 0
p63 keratinocytesGSE17611 93293156 93293880 724 0
p63 keratinocytesGSE17611 93795384 93796713 1329 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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