Annotation Detail for USH1C
Basic Information Top
| Gene Symbol: | USH1C ( AIE-75,DFNB18,NY-CO-37,NY-CO-38,PDZ-45,PDZ-73,PDZ-73/NY-CO-38,PDZ73,ush1cpst ) |
|---|---|
| Gene Full Name: | Usher syndrome 1C (autosomal recessive, severe) |
| Band: | 11p15.1 |
| Quick Links | Entrez ID:10083; OMIM: 605242; Uniprot ID:USH1C_HUMAN; ENSEMBL ID: ENSG00000006611; HGNC ID: 12597 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 78 | Phosphothreonine(MAPK) | HMM predict |
| 175 | Phosphoserine(CDC2) | HMM predict |
| 175 | Phosphoserine(IKK) | HMM predict |
| 201 | Phosphoserine(CDC2) | HMM predict |
| 543 | Lysine | HMM predict |
| 545 | Phosphotyrosine(Syk) | HMM predict |
- RefSeq ID: NM_153676
- Location:chr11 17472035-17522538
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Oct1 | Hela | GSE14283 | 17529127 | 17529162 | 35 | 6606 |
| TFAP2C | MCF7 | GSE21234 | 17525107 | 17525600 | 493 | 2815 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 17476685 | 17476824 | 139 | 0 |
| CTCF | CD4 | GSE12889 | 17482748 | 17483013 | 265 | 0 |
| CTCF | CD4 | GSE12889 | 17506340 | 17506538 | 198 | 0 |
| CTCF | CD4 | SISSRdata | 17476685 | 17476824 | 139 | 0 |
| CTCF | CD4 | SISSRdata | 17482748 | 17483013 | 265 | 0 |
| CTCF | CD4 | SISSRdata | 17506340 | 17506538 | 198 | 0 |
| CTCF | Hela | GSE12889 | 17506361 | 17506683 | 322 | 0 |
| NRSF | pAb | Jurkat | 17481165 | 17481498 | 333 | 0 |
| hScc1 | Bcell | GSE12603 | 17482321 | 17483758 | 1437 | 0 |
| hScc1 | Bcell | GSE12603 | 17505869 | 17506969 | 1100 | 0 |
| hScc1 | Bcell | GSE12603 | 17513288 | 17513659 | 371 | 0 |
| hScc1 | CdLS | GSE12603 | 17482592 | 17483197 | 605 | 0 |
| hScc1 | CdLS | GSE12603 | 17505626 | 17506719 | 1093 | 0 |
| hScc1 | G2 | GSE9613 | 17482321 | 17483197 | 876 | 0 |
| hScc1 | G2 | GSE9613 | 17506311 | 17506942 | 631 | 0 |
Validated miRNA targets