Annotation Detail for ARPC5
Basic Information Top
| Gene Symbol: | ARPC5 ( ARC16,MGC88523,dJ127C7.3,p16-Arc ) |
|---|---|
| Gene Full Name: | actin related protein 2/3 complex, subunit 5, 16kDa |
| Band: | 1q25.3 |
| Quick Links | Entrez ID:10092; OMIM: 604227; Uniprot ID:ARPC5_HUMAN; ENSEMBL ID: ENSG00000162704; HGNC ID: 708 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 50 | N-linked | HMM predict |
| 118 | Phosphoserine(CK2) | HMM predict |
| 118 | Phosphoserine(ATM) | HMM predict |
| 146 | Phosphothreonine(PKC) | HMM predict |
- RefSeq ID: NM_005717
- Location:chr1 181861956-181871607
- strand:-
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 181858967 | 181859251 | 284 | 2848 |
| CTCF | CD4 | SISSRdata | 181858967 | 181859251 | 284 | 2848 |
| CTCF | G2 | GSE9613 | 181858732 | 181859473 | 741 | 2854 |
| ER | Fulvestrant-MCF7 | GSE14664 | 181857120 | 181857169 | 49 | 4812 |
| Myc | K562 | GSE19551 | 181858968 | 181859246 | 278 | 2850 |
| Oct1 | Hela | GSE14283 | 181857119 | 181857165 | 46 | 4815 |
| Rb | Quiescent | GSE19898 | 181859090 | 181859226 | 136 | 2799 |
| hScc1 | Bcell | GSE12603 | 181845187 | 181845391 | 204 | 16668 |
| hScc1 | Bcell | GSE12603 | 181858628 | 181859412 | 784 | 2937 |
| hScc1 | CdLS | GSE12603 | 181844975 | 181845606 | 631 | 16666 |
| hScc1 | CdLS | GSE12603 | 181858697 | 181859473 | 776 | 2872 |
| hScc1 | G2 | GSE9613 | 181858770 | 181859473 | 703 | 2835 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 181869510 | 181869729 | 219 | 0 |
| CTCF | G2 | GSE9613 | 181870911 | 181871283 | 372 | 0 |
| H3K4me3 | colorectal | cancer | 181869729 | 181870947 | 1218 | 0 |
| H3ac | HepG2 | E | 181870023 | 181871220 | 1197 | 0 |
| PHF8 | 293T | GSE20725 | 181870862 | 181872320 | 1458 | 0 |
| PHF8 | HeLa | GSE20725 | 181870745 | 181872172 | 1427 | 0 |
| PHF8 | Hs68minusFBS | GSE20725 | 181870912 | 181871993 | 1081 | 0 |
| SRF | Hela | GSE8489 | 181869234 | 181870569 | 1335 | 0 |
| SRF | k562 | GSE8489 | 181869334 | 181870569 | 1235 | 0 |
| TAF | k562 | GSE8489 | 181869510 | 181870776 | 1266 | 0 |
| p130 | Senescent | GSE19898 | 181871015 | 181872016 | 1001 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2049 | EST | chr1 | 180336283 | 180443003 | 334 | mRNA | ARPC5 | chr1 | 180326990 | 180336642 | Sense/Antisense (SA) pairs | |