AutismKB 2.0

Annotation Detail for TSPAN5


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Basic Information Top
Gene Symbol:TSPAN5 ( NET-4,NET4,TM4SF9,TSPAN-5 )
Gene Full Name: tetraspanin 5
Band: 4q23
Quick LinksEntrez ID:10098; OMIM: 613136; Uniprot ID:TSN5_HUMAN; ENSEMBL ID: ENSG00000168785; HGNC ID: 17753
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
49N-linked (GlcNAc...) (Potential).
169N-linked (GlcNAc...) (Potential).
174N-linked (GlcNAc...) (Potential).
232N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
49N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
169N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
174N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
232N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
6Phosphotyrosine(INSR)HMM predict
49N-linkedHMM predict
169N-linkedHMM predict
174N-linkedHMM predict
202Phosphotyrosine(Syk)HMM predict
232N-linkedHMM predict
259Phosphoserine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005723
  • Location:chr4 99612434-99798749
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 99798399 99799173 774 37
FOXA1 MCF7GSE15244 99799883 99800614 731 1499
FOXA1 eGFPGSE10845 99799883 99800614 731 1499
FoxA1 MCF7MACSdata 99801906 99802201 295 3304
H3K4me2 HCT116GSE10453 99799430 99800436 1006 1184
NFkBII GM12878GSE19485 99802931 99804531 1600 4982
Nanog hESGSE18292 99802911 99803266 355 4339
Oct1 H2O2-HelaGSE14283 99803559 99803588 29 4824
Oct1 HelaGSE14283 99803559 99803587 28 4824
RARA MCF7GSE15244 99799913 99800614 701 1514
Rb SenescentGSE19898 99798954 99799388 434 422
hScc1 G2GSE9613 99798399 99799173 774 37
p130 QuiescentGSE19898 99799244 99799461 217 603
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 99607801 99608013 212 4528
CTCF CD4SISSRdata 99607801 99608013 212 4528
CTCF G2GSE9613 99607472 99608282 810 4558
Nanog hESGSE18292 99607801 99608081 280 4494
hScc1 BcellGSE12603 99607352 99608282 930 4618
hScc1 CdLSGSE12603 99607281 99608282 1001 4653
hScc1 G2GSE9613 99607472 99608282 810 4558
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF HelaGSE12889 99771422 99771562 140 0
CTCF G2GSE9613 99619014 99619341 327 0
CTCF G2GSE9613 99625304 99625456 152 0
CTCF G2GSE9613 99638525 99639275 750 0
CTCF G2GSE9613 99641873 99642127 254 0
CTCF G2GSE9613 99645748 99646002 254 0
CTCF G2GSE9613 99659126 99659341 215 0
CTCF G2GSE9613 99678364 99678723 359 0
CTCF G2GSE9613 99706730 99707083 353 0
CTCF G2GSE9613 99708709 99708878 169 0
CTCF G2GSE9613 99727077 99727362 285 0
CTCF G2GSE9613 99749514 99749848 334 0
CTCF G2GSE9613 99757719 99758039 320 0
CTCF G2GSE9613 99771438 99771767 329 0
CTCF G2GSE9613 99773036 99773290 254 0
ER E2-MCF7GSE14664 99749057 99749090 33 0
ER MCF7GSE19013 99645794 99646444 650 0
ER MCF7GSE19013 99654635 99655022 387 0
FOXA1 MCF7GSE15244 99712443 99713323 880 0
FOXA1 eGFPGSE10845 99712443 99713323 880 0
H3K4me2 HCT116GSE10453 99796319 99798103 1784 0
H3K4me3 colorectalcancer 99797208 99798999 1791 0
NRSF mAbJurkat 99715620 99715924 304 0
Nanog hESGSE18292 99699008 99699403 395 0
Nanog hESGSE18292 99763640 99764036 396 0
Oct1 HelaGSE14283 99742924 99742981 57 0
Oct1 HelaGSE14283 99749056 99749089 33 0
Oct1 HelaGSE14283 99797683 99797710 27 0
P300 T30-glioblastomaGSE21026 99766221 99767125 904 0
RARA MCF7GSE15244 99713717 99715020 1303 0
Rb shRbQuiescentGSE19898 99639101 99639356 255 0
TFAP2C MCF7GSE21234 99713919 99714513 594 0
hScc1 BcellGSE12603 99766476 99766626 150 0
hScc1 BcellGSE12603 99797830 99799484 1654 0
p130 SenescentGSE19898 99797681 99798060 379 0
p63 keratinocytesGSE17611 99680719 99681722 1003 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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