AutismKB 2.0

Annotation Detail for CDH17


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Basic Information Top
Gene Symbol:CDH17 ( CDH16,FLJ26931,HPT-1,HPT1,MGC138218,MGC142024 )
Gene Full Name: cadherin 17, LI cadherin (liver-intestine)
Band: 8q22.1
Quick LinksEntrez ID:1015; OMIM: 603017; Uniprot ID:CAD17_HUMAN; ENSEMBL ID: ENSG00000079112; HGNC ID: 1756
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
149N-linked (GlcNAc...) (Potential).
184N-linked (GlcNAc...) (Potential).
250N-linked (GlcNAc...) (Potential).
419N-linked (GlcNAc...) (Potential).
456N-linked (GlcNAc...) (Potential).
546N-linked (GlcNAc...) (Potential).
548Phosphoserine.
587N-linked (GlcNAc...) (Potential).
722N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
149N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
184N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
250N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
419N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
456N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
546N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
548Phosphoserine.Swiss-Prot 53.0
548PhosphoserinePhospho.ELM 6.0
587N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
722N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
91Phosphothreonine(PKA)HMM predict
149N-linkedHMM predict
158Phosphothreonine(CDC2)HMM predict
184N-linkedHMM predict
225Phosphoserine(ATM)HMM predict
225Phosphoserine(CK1)HMM predict
227O-linkedHMM predict
250N-linkedHMM predict
293Phosphotyrosine(EGFR)HMM predict
342Phosphoserine(CDC2)HMM predict
385Phosphothreonine(CDC2)HMM predict
409Phosphoserine(PKG)HMM predict
419N-linkedHMM predict
454Phosphotyrosine(INSR)HMM predict
454Phosphotyrosine(EGFR)HMM predict
456N-linkedHMM predict
546N-linkedHMM predict
567Phosphoserine(ATM)HMM predict
587N-linkedHMM predict
631Phosphoserine(CDC2)HMM predict
722N-linkedHMM predict
740Phosphotyrosine(EGFR)HMM predict
740Phosphotyrosine(SRC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004063
  • Location:chr8 95208567-95289985
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 95298498 95299715 1217 9121
FOXA1 DLD1GSE12801 95290088 95290563 475 340
FOXA1 MCF7GSE15244 95295173 95295536 363 5369
Oct1 HelaGSE14283 95299462 95299495 33 9493
RARA MCF7GSE15244 95308140 95308896 756 18533
RARG MCF7GSE15244 95300589 95301271 682 10945
RARG MCF7GSE15244 95308140 95309142 1002 18656
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Fos K562GSE19551 95201320 95201851 531 6982
p130 QuiescentGSE19898 95197501 95197920 419 10857
p130 shRbQuiescentGSE19898 95197324 95198175 851 10818
p130 shRbSenescentGSE19898 95197420 95197682 262 11017
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 95229986 95230385 399 0
CTCF G2GSE9613 95244130 95244303 173 0
CTCF G2GSE9613 95286128 95286309 181 0
ER MCF7GSE19013 95237036 95238149 1113 0
FOXA1 DLD1GSE12801 95273381 95273884 503 0
FOXA1 DLD1GSE12801 95288927 95289346 419 0
FOXA1 MCF7GSE15244 95236855 95238408 1553 0
FOXA1 MCF7GSE15244 95273561 95273920 359 0
FoxA1 MCF7MACSdata 95237838 95238020 182 0
GATA3 MCF7GSE15244 95236820 95238552 1732 0
NRSF JurkatSISSRdata 95269422 95269566 144 0
NRSF-poly JurkatQuESTdata 95269313 95269661 348 0
Nanog hESGSE18292 95232094 95232702 608 0
Oct1 H2O2-HelaGSE14283 95260499 95260534 35 0
Oct1 H2O2-HelaGSE14283 95273748 95273776 28 0
Oct1 HelaGSE14283 95230604 95230703 99 0
Oct1 HelaGSE14283 95232338 95232390 52 0
Oct1 HelaGSE14283 95260464 95260545 81 0
Oct1 HelaGSE14283 95263148 95263183 35 0
RARA MCF7GSE15244 95236885 95238175 1290 0
RARG MCF7GSE15244 95236820 95238175 1355 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-130b hsa-mir-130b 22 20378769
hsa-miR-130b hsa-mir-130b 22 20378769
hsa-miR-130b* hsa-mir-130b 22 20378769
hsa-miR-130b* hsa-mir-130b 22 20378769
hsa-miR-141 hsa-mir-141 12 20378769
hsa-miR-141 hsa-mir-141 12 20378769
hsa-miR-141* hsa-mir-141 12 20378769
hsa-miR-141* hsa-mir-141 12 20378769
hsa-miR-149 hsa-mir-149 2 20378769
hsa-miR-149 hsa-mir-149 2 20378769
hsa-miR-149* hsa-mir-149 2 20378769
hsa-miR-149* hsa-mir-149 2 20378769
hsa-miR-155 hsa-mir-155 21 20378769
hsa-miR-155 hsa-mir-155 21 20378769
hsa-miR-155* hsa-mir-155 21 20378769
hsa-miR-155* hsa-mir-155 21 20378769
hsa-miR-200c hsa-mir-200c 12 20378769
hsa-miR-200c hsa-mir-200c 12 20378769
hsa-miR-200c* hsa-mir-200c 12 20378769
hsa-miR-200c* hsa-mir-200c 12 20378769
hsa-miR-205 hsa-mir-205 1 20378769
hsa-miR-205 hsa-mir-205 1 20378769
hsa-miR-210 hsa-mir-210 11 20378769
hsa-miR-210 hsa-mir-210 11 20378769
hsa-miR-222 hsa-mir-222 X 20378769
hsa-miR-222 hsa-mir-222 X 20378769
hsa-miR-222* hsa-mir-222 X 20378769
hsa-miR-222* hsa-mir-222 X 20378769
hsa-miR-96 hsa-mir-96 7 20378769
hsa-miR-96 hsa-mir-96 7 20378769
hsa-miR-96* hsa-mir-96 7 20378769
hsa-miR-96* hsa-mir-96 7 20378769
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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