AutismKB 2.0

Annotation Detail for CDH18


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:CDH18 ( CDH14,CDH14L,CDH24 )
Gene Full Name: cadherin 18, type 2
Band: 5p14.3
Quick LinksEntrez ID:1016; OMIM: 603019; Uniprot ID:CAD18_HUMAN; ENSEMBL ID: ENSG00000145526; HGNC ID: 1757
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
36N-linked (GlcNAc...) (Potential).
255N-linked (GlcNAc...) (Potential).
455N-linked (GlcNAc...) (Potential).
536N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
36N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
255N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
455N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
536N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
36N-linkedHMM predict
164Phosphotyrosine(Jak)HMM predict
184O-linkedHMM predict
191Phosphotyrosine(INSR)HMM predict
209Phosphoserine(ATM)HMM predict
255N-linkedHMM predict
299Phosphoserine(IKK)HMM predict
455N-linkedHMM predict
536N-linkedHMM predict
542N-linkedHMM predict
551Phosphothreonine(PKC)HMM predict
557O-linkedHMM predict
557Phosphoserine(PKG)HMM predict
579O-linkedHMM predict
580Phosphoserine(CK1)HMM predict
582Phosphoserine(CK1)HMM predict
639Phosphoserine(PKG)HMM predict
678N-linkedHMM predict
680PhosphoserineHMM predict
698Phosphothreonine(MAPK)HMM predict
703Phosphothreonine(PKA)HMM predict
704O-linkedHMM predict
749Phosphoserine(CK1)HMM predict
749Phosphoserine(IKK)HMM predict
752O-linkedHMM predict
755Phosphoserine(IKK)HMM predict
755Phosphoserine(CK1)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004934
  • Location:chr5 19508913-20017045
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 20023729 20023762 33 6700
Oct1 H2O2-HelaGSE14283 20023914 20023939 25 6881
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 19810676 19810884 208 0
ER E2-MCF7GSE14664 19541757 19541791 34 0
ER MCF7GSE19013 19920784 19921701 917 0
FOXA1 MCF7GSE15244 19916412 19916991 579 0
FoxA1 MCF7MACSdata 19555428 19555579 151 0
FoxA1 MCF7MACSdata 19770810 19771128 318 0
FoxA1 MCF7MACSdata 19780324 19780545 221 0
FoxA1 MCF7MACSdata 19916587 19916946 359 0
Nanog hESGSE18292 19769877 19770247 370 0
Oct1 H2O2-HelaGSE14283 19524073 19524108 35 0
Oct1 H2O2-HelaGSE14283 19833479 19833517 38 0
Oct1 H2O2-HelaGSE14283 19941454 19941484 30 0
Oct1 HelaGSE14283 19524077 19524142 65 0
Oct1 HelaGSE14283 19623382 19623462 80 0
Oct1 HelaGSE14283 19684623 19684654 31 0
Oct1 HelaGSE14283 19694575 19694640 65 0
Oct1 HelaGSE14283 19941452 19941491 39 0
Oct1 HelaGSE14283 19962236 19962265 29 0
Oct1 HelaGSE14283 19975628 19975686 58 0
Oct4 hESGSE21916 19963708 19964164 456 0
P300 T30-glioblastomaGSE21026 19964632 19965573 941 0
RARA MCF7GSE15244 19916374 19916991 617 0
STAT1 HeLaGSE12782 19641392 19642506 1114 0
STAT1 HeLaGSE12783 19641392 19642472 1080 0
Sox2 hESGSE18292 19963708 19964383 675 0
TFAP2C MCF7GSE21234 19555301 19555872 571 0
TFAP2C MCF7GSE21234 19741993 19743071 1078 0
TFAP2C MCF7GSE21234 19770568 19771195 627 0
TFAP2C MCF7GSE21234 19916687 19917081 394 0
hScc1 BcellGSE12603 19675393 19675641 248 0
p63 keratinocytesGSE17611 19641666 19642562 896 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-491-3p hsa-mir-491 9 21128281
hsa-miR-491-3p hsa-mir-491 9 21128281
hsa-miR-491-5p hsa-mir-491 9 21128281
hsa-miR-491-5p hsa-mir-491 9 21128281
hsa-miR-646 hsa-mir-646 20 21128281
hsa-miR-646 hsa-mir-646 20 21128281
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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