Annotation Detail for CHST4

View Evidences	View Variants	View Annotations

Basic Information Top

Gene Symbol:	CHST4 ( GST3,GlcNAc6ST2,HECGLCNAC6ST,LSST )
Gene Full Name:	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4
Band:	16q22.2
Quick Links	Entrez ID:10164; OMIM: NA; Uniprot ID:CHST4_HUMAN; ENSEMBL ID: ENSG00000140835; HGNC ID: 1972
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:3 results
Experimental PTM Sites from dbPTM:3 results
Predicted PTM Sites by profile HMM from dbPTM:10 results

Location(AA)	Modification
30	N-linked (GlcNAc...) (Potential).
308	N-linked (GlcNAc...) (Potential).
329	N-linked (GlcNAc...) (Potential).

Location(AA)	Modifications	Resource
30	N-linked (GlcNAc...) (Potential).	Swiss-Prot 53.0
308	N-linked (GlcNAc...) (Potential).	Swiss-Prot 53.0
329	N-linked (GlcNAc...) (Potential).	Swiss-Prot 53.0

Location(AA)	Modification	Resource
112	Phosphotyrosine(Syk)	HMM predict
112	Phosphotyrosine(INSR)	HMM predict
121	Phosphoserine(PKG)	HMM predict
157	Phosphoserine(ATM)	HMM predict
243	Phosphotyrosine(Syk)	HMM predict
243	Phosphotyrosine(Jak)	HMM predict
244	Phosphotyrosine(Syk)	HMM predict
287	Phosphothreonine(PKC)	HMM predict
308	N-linked	HMM predict
340	Phosphotyrosine(Jak)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_005769
Location:chr16 70117561-70129913
strand:+

Upstream the gene:2 results
Downstream the gene:3 results
Inside the gene:4 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Oct1	H2O2-Hela	GSE14283	70100671	70100701	30	16876
TFAP2C	MCF7	GSE21234	70111821	70112350	529	5476

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	70133688	70133968	280	3915
CTCF	CD4	SISSRdata	70133688	70133968	280	3915
CTCF	G2	GSE9613	70133665	70134150	485	3994

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	70129189	70129395	206	0
CTCF	CD4	SISSRdata	70129189	70129395	206	0
Stat6	IL-4-hr4	GSE17850	70120008	70120535	527	0
hScc1	Bcell	GSE12603	70128852	70129424	572	0

Validated miRNA targets

Cis-Nats regulation

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved