Annotation Detail for SLC25A13

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Basic Information Top

Gene Symbol:	SLC25A13 ( ARALAR2,CITRIN,CTLN2 )
Gene Full Name:	solute carrier family 25, member 13 (citrin)
Band:	7q21.3
Quick Links	Entrez ID:10165; OMIM: 603859; Uniprot ID:CMC2_HUMAN; ENSEMBL ID: ENSG00000004864; HGNC ID: 10983
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
484	N6-acetyllysine.

Location(AA)	Modifications	Resource
484	N6-acetyllysine (By similarity).	Swiss-Prot 53.0

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
FOXA1	MCF7	GSE15244	95794769	95795582	813	5835
FOXA1	MCF7	GSE15244	95798432	95799113	681	9432
Oct1	Hela	GSE14283	95795579	95795608	29	6253
RARA	MCF7	GSE15244	95794769	95795582	813	5835
Rb	Quiescent	GSE19898	95789515	95789733	218	284
USF1	HepG2	E	95789528	95790368	840	608
USF1	HepG2	E	95791324	95791572	248	2108
USF2	HepG2	E	95789637	95790299	662	628
p130	Senescent	GSE19898	95789507	95789742	235	284
p130	shRbQuiescent	GSE19898	95789316	95789736	420	186
p130	shRbSenescent	GSE19898	95789309	95789583	274	106
p63	keratinocytes	GSE17611	95797048	95797911	863	8139

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CBP	T0-glioblastoma	GSE21026	95584590	95585139	549	2604
CTCF	G2	GSE9613	95585796	95586120	324	1511

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	G2	GSE9613	95640968	95641125	157
CTCF	G2	GSE9613	95642105	95642590	485
CTCF	G2	GSE9613	95655400	95655585	185
CTCF	G2	GSE9613	95752183	95752327	144
CTCF	G2	GSE9613	95788789	95789562	773
ER	E2-MCF7	GSE14664	95639505	95639546	41
ER	E2-MCF7	GSE14664	95718719	95718759	40
ER	Fulvestrant-MCF7	GSE14664	95639505	95639540	35
ER	MCF7	GSE19013	95642226	95642721	495
FOXA1	MCF7	GSE15244	95770385	95771563	1178
Fos	K562	GSE19551	95703295	95704422	1127
FoxA1	MCF7	MACSdata	95770314	95770762	448
H3K4me3	colorectal	cancer	95787919	95788539	620
KLF4	hES	GSE17917	95788394	95788552	158
Nanog	ES	GSE20650	95610585	95611617	1032
Nanog	hES	GSE18292	95593743	95593937	194
Nanog	hES	GSE18292	95610461	95611752	1291
Nanog	hES	GSE18292	95665369	95665882	513
Nanog	hES	GSE18292	95752960	95753233	273
Oct1	H2O2-Hela	GSE14283	95662335	95662363	28
Oct1	H2O2-Hela	GSE14283	95669264	95669300	36
Oct1	H2O2-Hela	GSE14283	95680463	95680500	37
Oct1	H2O2-Hela	GSE14283	95710431	95710481	50
Oct1	Hela	GSE14283	95639508	95639540	32
Oct1	Hela	GSE14283	95669265	95669301	36
Oct1	Hela	GSE14283	95678038	95678065	27
Oct1	Hela	GSE14283	95680466	95680497	31
Oct1	Hela	GSE14283	95710432	95710481	49
Oct1	Hela	GSE14283	95718724	95718752	28
TFAP2C	MCF7	GSE21234	95602284	95602930	646
TFAP2C	MCF7	GSE21234	95645740	95646260	520
TFAP2C	MCF7	GSE21234	95781515	95782072	557
hScc1	Bcell	GSE12603	95788820	95789260	440
p130	shRbQuiescent	GSE19898	95788659	95789180	521

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-let-7b	hsa-let-7b	22	18668040
hsa-let-7b*	hsa-let-7b	22	18668040
hsa-miR-1	hsa-mir-1-2	18	18668040
hsa-miR-1	hsa-mir-1-1	20	18668040
hsa-miR-155	hsa-mir-155	21	18668040
hsa-miR-155*	hsa-mir-155	21	18668040
hsa-miR-16	hsa-mir-16-1	13	18668040
hsa-miR-16	hsa-mir-16-2	3	18668040
hsa-miR-30a	hsa-mir-30a	6	18668040
hsa-miR-30a*	hsa-mir-30a	6	18668040
hsa-miR-30b	hsa-mir-30b	8	18668040
hsa-miR-30b*	hsa-mir-30b	8	18668040
hsa-miR-30c	hsa-mir-30c-2	6	18668040
hsa-miR-30c	hsa-mir-30c-1	1	18668040
hsa-miR-30c-1*	hsa-mir-30c-1	1	18668040
hsa-miR-30c-2*	hsa-mir-30c-2	6	18668040
hsa-miR-30d	hsa-mir-30d	8	18668040
hsa-miR-30d*	hsa-mir-30d	8	18668040
hsa-miR-30e	hsa-mir-30e	1	18668040
hsa-miR-30e*	hsa-mir-30e	1	18668040

ID in Tarbase	Data Type	Support Type	miRNA	Gene	Direct Support	Publication
894	Unknown	pSILAC	let-7b	SLC25A13	down 50-25%	18668040
Ensembl	Protein Type	Differentially expressed in	Pathology or Event	Mis Regulation	Gene Expression	Tumour Involvement
ENSG00000004864		n_a	n_a	n_a	"lymphocyte, muscle cell"	"benign tumour, malignant tumour, carcinoma, sarcoma"

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018