Annotation Detail for RCL1

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Basic Information Top

Gene Symbol:	RCL1 ( RNAC,RPCL1 )
Gene Full Name:	RNA terminal phosphate cyclase-like 1
Band:	9p24.1
Quick Links	Entrez ID:10171; OMIM: 611405; Uniprot ID:RCL1_HUMAN; ENSEMBL ID: ENSG00000120158; HGNC ID: 17687
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:0 results
Experimental PTM Sites from dbPTM:0 results
Predicted PTM Sites by profile HMM from dbPTM:6 results

No data

Location(AA)	Modification	Resource
60	N-linked	HMM predict
67	N-linked	HMM predict
201	Phosphoserine(CDK)	HMM predict
226	Sulfotyrosine	HMM predict
238	Phosphoserine(CDC2)	HMM predict
321	Phosphoserine(CDC2)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_005772
Location:chr9 4782936-4851060
strand:+

Upstream the gene:9 results
Downstream the gene:6 results
Inside the gene:18 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Fos	K562	GSE19551	4782370	4783203	833	150
NRSF	Jurkat	GSE13047	4776659	4776855	196	6180
Oct1	H2O2-Hela	GSE14283	4765248	4765276	28	17675
Oct1	Hela	GSE14283	4765248	4765276	28	17675
Rb	Quiescent	GSE19898	4782447	4782763	316	332
Rb	Senescent	GSE19898	4782448	4783210	762	108
Rb	shRbQuiescent	GSE19898	4782506	4782802	296	283
hScc1	Bcell	GSE12603	4782497	4783085	588	146
p130	shRbSenescent	GSE19898	4782255	4782935	680	342

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ER	MCF7	GSE19013	4856117	4856821	704	5409
FOXA1	MCF7	GSE15244	4853924	4854624	700	3214
FOXA1	MCF7	GSE15244	4856299	4856972	673	5575
Gata2	K562	GSE18868	4852662	4853366	704	1954
RARA	MCF7	GSE15244	4856262	4857008	746	5575
TFAP2C	MCF7	GSE21234	4856167	4857151	984	5599

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	4787472	4787705	233	0
CTCF	CD4	SISSRdata	4787472	4787705	233	0
ER	MCF7	GSE19013	4842327	4843386	1059	0
FOXA1	MCF7	GSE15244	4829162	4830046	884	0
Fos	K562	GSE19551	4823002	4823787	785	0
GABP	k562	GSE8489	4789735	4789977	242	0
Gata1	K562	GSE18868	4842372	4842877	505	0
Gata2	K562	GSE18868	4789618	4790215	597	0
Gata2	K562	GSE18868	4842262	4842902	640	0
H3ac	HepG2	E	4783454	4784998	1544	0
Oct1	H2O2-Hela	GSE14283	4825232	4825260	28	0
P300	T30-glioblastoma	GSE21026	4822668	4823955	1287	0
PHF8	HeLa	GSE20725	4782379	4783695	1316	0
SRF	k562	GSE8489	4818808	4819668	860	0
TAF	Hela	GSE8489	4836653	4836860	207	0
TAF	k562	GSE8489	4819271	4819668	397	0
TFAP2C	MCF7	GSE21234	4843576	4843790	214	0
hScc1	Bcell	GSE12603	4783551	4783772	221	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
26171	mRNA	RCL1	chr9	4782936	4851061	1311	mRNA		chr9	4847950	4849261	Non-exonic Bidirectional (NOB) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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